New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	881673 =	23 (0.890)	4 (0.160)	3/300	NT	16.4%	coding (1188/1887 nt)	PP_0765	conserved exported protein of unknown function
	?	AE015451	881743 =	19 (0.780)					coding (1258/1887 nt)	PP_0765	conserved exported protein of unknown function

TCATGAATTACCATAGCCGTGCACCCATCTTCAGTGCCACAGGGGCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGT  >  AE015451/881441‑881880                                                                                                                                                                                                                                         |                                                                                                                                                                                                                tCATGAATTACCATAGCCGTGCACCCATCTTCAGTGCCACAGGGGCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGcccc                                                                                                                                                                                                                 >  2:428750/1‑233 (MQ=255)                  cGTGCACCCATCTTCAGTGCCACAGGGGCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCaa                                                                                                                                                                                             <  1:495187/236‑1 (MQ=255)                        cccATCTTCAGTGCCACAGGGGCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCaa                                                                                                                                                                                             <  1:215723/230‑1 (MQ=255)                                             gCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAAcg                                                                                                                                                                                                             <  1:352585/193‑1 (MQ=255)                                                ccgccgTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACgg                                                                                                                                                                                     >  1:409297/1‑214 (MQ=255)                                                                                              gcgcATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTggcg                                                                                                                                                    >  1:19878/1‑201 (MQ=255)                                                                                                             tGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGgcgc                                                                                                                                                <  2:242148/190‑1 (MQ=255)                                                                                                                  gTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCt                                                                                                                                                                                                <  2:390467/137‑1 (MQ=255)                                                                                                                            aTTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                             <  2:179281/226‑1 (MQ=255)                                                                                                                                      cTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGa                                                                                                                                                                                    >  2:32384/1‑129 (MQ=255)                                                                                                                                                  ccccGATGACATCCGCCTTTATGGCTTGAGTTTCTCCACCCCGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTgtc                                                                                                                                                                 <  2:19878/136‑1 (MQ=255)                                                                                                                                                        ggACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCCTCCCATTGGCGGcgcg                                                                                                                                               >  1:472159/1‑148 (MQ=255)                                                                                                                                                        ggACATCCGCCTTTATGGCTTCAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCCGTGCAGCTCAATACCACGGATACCCTGtt                                                                                                                                                                           >  2:392159/1‑120 (MQ=255)                                                                                                                                                                      aTGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATcc                                                                                                                                                                               <  1:84181/102‑1 (MQ=255)                                                                                                                                                                                tttCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTcc                                                                <  2:385701/203‑1 (MQ=255)                                                                                                                                                                                      caccacGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGt                          <  1:428754/235‑1 (MQ=255)                                                                                                                                                                                         cccGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                             <  1:32386/163‑1 (MQ=255)                                                                                                                                                                                          ccatgcaggtcttgccccggcgtaccggtcagcagcgatgcgttgctCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGGCCg                                                                                                                      <  2:183896‑M1/92‑1 (MQ=255)                                                                                                                                                                                                    cttgccccggcgtaccggtcagcagcgatgcgttgccCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGAc            <  1:467394‑M1/198‑1 (MQ=255)                                                                                                                                                                                                    cTGGCAGCGCCTGGAGCGGCGAAGTCAGCTACTGCCCCAACGCGCCAGTGCTGCTCAATACTACGGatat                                                                                                                                                                                 <  2:211401/70‑1 (MQ=255)                                                                                                                                                                                                        cACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATc                                                                          <  1:305209/169‑1 (MQ=255)                                                                                                                                                                                                        cACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATc                                                                          >  2:305205/1‑169 (MQ=255)                                                                                                                                                                                                          ccggcgtaccggtcagcagcgatgcgttgctCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTggcgg                                                                                                                                                   <  1:20793‑M1/63‑1 (MQ=255)                                                                                                                                                                                                          ccggcgtaccggtcagcagcgatgcgttgctCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGCACGCCGGGGCCAGACCTGCATGGGTAt                                                                                         <  1:240137‑M1/121‑1 (MQ=255)                                                                                                                                                                                                                 gAGCGGCGCAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGAcc                                                           <  2:378396/175‑1 (MQ=255)                                                                                                                                                                                                                         aaGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAg       >  2:490509/1‑219 (MQ=255)                                                                                                                                                                                                                          aGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTACGTccc                                                                                                                                                           >  2:90560/1‑70 (MQ=255)                                                                                                                                                                                                                              aGCTACCGCCCCAGCGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGa                                                             <  1:260415/160‑1 (MQ=255)                                                                                                                                                                                                                                 tACCGCCGCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                             <  2:29518/125‑1 (MQ=255)                                                                                                                                                                                                                                        ccAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGt  <  2:467390/209‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                TCATGAATTACCATAGCCGTGCACCCATCTTCAGTGCCACAGGGGCCCCGCCGTCCGTGTTCGCCGGGCTGAGCGCCCTGCCTGCGCAGCTGCGCGCATTGGCGCCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGT  >  AE015451/881441‑881880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.