New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	881673 =	23 (0.890)	4 (0.160)	3/300	NT	16.4%	coding (1188/1887 nt)	PP_0765	conserved exported protein of unknown function
	?	AE015451	881743 =	19 (0.780)					coding (1258/1887 nt)	PP_0765	conserved exported protein of unknown function

CCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGGA  >  AE015451/881545‑881912                                                                                                                                                                                                       |                                                                                                                                                                          gtcatccggctggcacccatcacctggtcgaagaaatgggtcagtgtggtctggaactgggtgatctccttacggcgatacccatgcaggtcttgccccggcgtaccggtcagcagcgatgcgttgctcaacgcgccgccaatgggacggacaccagcgaacaggatatccgtggtattgagctgcactggcgcgttgGGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAg                                                                                                                                       <  1:467394‑M2/37‑1 (MQ=255)                    aTTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             <  2:179281/226‑1 (MQ=255)                                                                        tttCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTcc                                                                                                <  2:385701/203‑1 (MQ=255)                                                                              caccacGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGt                                                          <  1:428754/235‑1 (MQ=255)                                                                              atacccatgcaggtctggccccggcgtgccggtcagcagcgatgcgttgctcaacgcgccgccaatgggacggacaccagcgaacaggatatccgtggtattgagctgcactggcgcgttgAGCAACGCATCGCTGCTGACCGGTACGCCgg                                                                                                                                             <  1:240137‑M2/31‑1 (MQ=255)                                                                                 cccGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             <  1:32386/163‑1 (MQ=255)                                                                                  ccatgcaggtcttgccccggcgtaccggtcagcagcgatgcgttgctCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGGCCg                                                                                                                                                      <  2:183896‑M1/92‑1 (MQ=255)                                                                                            cttgccccggcgtaccggtcagcagcgatgcgttgccCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGAc                                            <  1:467394‑M1/198‑1 (MQ=255)                                                                                                cACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATc                                                                                                          >  2:305205/1‑169 (MQ=255)                                                                                                cACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATc                                                                                                          <  1:305209/169‑1 (MQ=255)                                                                                                  ccggcgtaccggtcagcagcgatgcgttgctCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGCACGCCGGGGCCAGACCTGCATGGGTAt                                                                                                                         <  1:240137‑M1/121‑1 (MQ=255)                                                                                                         gAGCGGCGCAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGAcc                                                                                           <  2:378396/175‑1 (MQ=255)                                                                                                           cggccagcagcgatgcgttgctcaacgcgccgccaatgggacggacaccagcgaacaggatatccgtggtattgagctgcactggcgcgttgAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             <  2:183896‑M2/47‑1 (MQ=255)                                                                                                                 aaGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAg                                       >  2:490509/1‑219 (MQ=255)                                                                                                                      aGCTACCGCCCCAGCGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGa                                                                                             <  1:260415/160‑1 (MQ=255)                                                                                                                         tACCGCCGCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             <  2:29518/125‑1 (MQ=255)                                                                                                                                ccAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGt                                  <  2:467390/209‑1 (MQ=255)                                                                                                                                        ccgccaatgggacggacaccagcgaacaggatatccgtggtattgagctgcactggcgcgttgAGCAACGCATCGCTGCTGACCGGTACGCCgg                                                                                                                                             <  1:20793‑M2/31‑1 (MQ=255)                                                                                                                                               aGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGt                                                                 >  1:374097/1‑163 (MQ=255)                                                                                                                                                  gcAATACCACGGATCCCCTGTGCGCTGGTGTCCGTCCCATTCGCGGCGCGTTGAGCAACGCATCgct                                                                                                                                                              <  2:210291/66‑1 (MQ=255)                                                                                                                                                             gATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTc                                     <  2:409293/177‑1 (MQ=255)                                                                                                                                                                 tCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGCACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCCGGt                                                                 >  2:397599/1‑145 (MQ=255)                                                                                                                                                                   cTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGga  >  1:139539/1‑206 (MQ=255)                                                                                                                                                                        cGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGTGAAGTGGGTGTTACCCATGTcggc          >  1:4410/1‑193 (MQ=255)                                                                                                                                                                           tGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             >  2:221946/1‑75 (MQ=255)                                                                                                                                                                           tGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATgg                                                                                                                             <  1:221950/75‑1 (MQ=255)                                                                                                                                                                                                       |                                                                                                                                                                          CCTCTGATCGTGGCGGGTAATTCCGAGTACTTTGTGGAATACCCCGAGGACATCCGCCTTTATGGCTTGAGTTTCTCCACCACGTTACCCACTGGCACCGCCTGGAGCGGCGAAGTCAGCTACCGCCCCAACGCGCCAGTGCAGCTCAATACCACGGATATCCTGTTCGCTGGTGTCCGTCCCATTGGCGGCGCGTTGAGCAACGCATCGCTGCTGACCGGTACGCCGGGGCAAGACCTGCATGGGTATCGCCGTAAGGAGATCACCCAGTTCCAGACCACACTGACCCATTTCTTCGACCAGGTGATGGGTGCCAGCCGGATGACTGTAGTCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGGA  >  AE015451/881545‑881912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.