New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2560052 =	18 (0.700)	3 (0.120)	3/298	NT	14.7%	coding (14/603 nt)	PP_2243	conserved protein of unknown function
	?	AE015451	2560094 =	18 (0.750)					coding (56/603 nt)	PP_2243	conserved protein of unknown function

GTACAAGTTCAATGCCAACTACGACGTGCGGGTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGC  >  AE015451/2559822‑2560227                                                                                                                                                                                                                                       |                                                                                                                                                                                gTACAAGTTCAATGCCAACTACGACGTGCGGGTTGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAAGCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACTACATTCTTGCAGCCAAACGtctc                                                                                                                                                                              <  2:468341/234‑1 (MQ=255) gTACAAGTTCAATGCCAACTACGACGTGCGGGTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGtctc                                                                                                                                                                              <  2:489196/234‑1 (MQ=255) gTACAAGTTCAATGCCAACTACGACGTGCGGGTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGtctc                                                                                                                                                                              <  2:274387/234‑1 (MQ=255)    aacgTTCAATGCCAACTACGACGTGCGGGTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGc                                                                                                                                                                         <  2:332759/233‑1 (MQ=255)                                gTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGc                                                                                                                                                   >  2:346815/1‑230 (MQ=255)                                         aacaacGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGc                                                                                                                                            <  2:398209/228‑1 (MQ=255)                                                                       ggcggcAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAAt                                                                                                                                     <  2:255146/205‑1 (MQ=255)                                                                                                         ggtcggcgtctgactgatgggccagcggcaggatgccgtcatccgtatggtgcaggcgcccgttcttctgggccggggtcagtgcatggctgatcagggtcaggcggattgctttcaccaggcatttct                                                                                                                                                                               <  2:288323‑M1/3‑1 (MQ=255)                                                                                                                  cGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCAc                                                           <  1:346819/236‑1 (MQ=255)                                                                                                                                               atCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGGCTCGCAGCGTGCtc                                                                                                                                                                   >  2:117558/1‑102 (MQ=255)                                                                                                                                                 taaCTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGcc                                                                                                 <  2:228771/166‑1 (MQ=255)                                                                                                                                                         gATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCAtcagt                      >  1:299642/1‑234 (MQ=255)                                                                                                                                                             ccAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                    <  1:285389/184‑1 (MQ=255)                                                                                                                                                              cAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGc               <  1:373441/236‑1 (MQ=255)                                                                                                                                                                aGGGCCGCCCTGCGGCCCAATCGCGGTCCAATCGGGTCGCGAATGGCCGACGCCACTCGTGCAGCCAAACGTCTCGCAGCGTACTAACCCATGCACCCCACCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCt                                                                                                         <  2:76735/144‑1 (MQ=255)                                                                                                                                                                  ggCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGcc                                    <  2:490294/211‑1 (MQ=255)                                                                                                                                                                   gccgccCTGCGGCCAAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACgg                                             <  1:2204/201‑1 (MQ=255)                                                                                                                                                                   cccgttcttctgggcctgggtcagggcatggcagatcagggtcaggcggatggctttcaccaggcattGCTCGCAGCGTGCTAAAGCATGCACCCCAGCCCGCTGCGAGAAATGGCTGGTGaaagaca                                                                                                                      <  2:477512‑M1/60‑4 (MQ=255)                                                                                                                                                                               cccAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGCGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGc  >  1:74277/1‑232 (MQ=255)                                                                                                                                                                                      gcgGTTCAATCGGGTCGCGAATGGCCTACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGc               <  1:21509/212‑1 (MQ=255)                                                                                                                                                                                      gcgGCTCAATCGGGTCGCGAATGGCCGCCGACATCCTTGCAGCCAAACGTCTCGAAGCGTGCTAAACCATGCCCCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGc  <  1:69804/225‑1 (MQ=255)                                                                                                                                                                                                  cagatcagggtcaggcggatggctttcaccaggcattTCTCGCAGCGTGCTAAACCTTGCACCTCAGCACGCTGCGAGAAATGCCTGGTGTAAGTCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAgg                                                                                  <  2:178077‑M1/96‑1 (MQ=255)                                                                                                                                                                                                             caggcggatggctttcaccaggcattTCTCGCCGCGTGCTAAACAATGCACCCCAGCCAGCCGCGAGAAAAGCCTGGTGACAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAg                                                                                   <  1:221121‑M1/95‑1 (MQ=255)                                                                                                                                                                                                              ccGACGACAGTCTTGCAGCCAAACGTCTCGCAGCGTGCTAACCCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGgcgc                                                                 <  2:19415/138‑1 (MQ=255)                                                                                                                                                                                                                                 cAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGAc                 <  1:209431/167‑1 (MQ=255)                                                                                                                                                                                                                                  aaaCGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                    <  2:472940/115‑1 (MQ=255)                                                                                                                                                                                                                                  aaaCGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                    >  1:472944/1‑115 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                GTACAAGTTCAATGCCAACTACGACGTGCGGGTAGGCGTGAACAACGTCTTCGACAAGCAGATCCTGCGCGGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGC  >  AE015451/2559822‑2560227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.