New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2560052 =	18 (0.700)	3 (0.120)	3/298	NT	14.7%	coding (14/603 nt)	PP_2243	conserved protein of unknown function
	?	AE015451	2560094 =	18 (0.750)					coding (56/603 nt)	PP_2243	conserved protein of unknown function

GGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGCGTGCAACTGCTGAGTGCGCCAGAGCGGCGGGCTTGCGAGACGGCAGCGTGGTTAACGGGGGCA  >  AE015451/2559892‑2560290                                                                                                                                                                                                           |                                                                                                                                                                                                     ggcggcAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAAt                                                                                                                                                                                                    <  2:255146/205‑1 (MQ=255)                                            cGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCAc                                                                                                                          <  1:346819/236‑1 (MQ=255)                                                                           taaCTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGcc                                                                                                                                                                <  2:228771/166‑1 (MQ=255)                                                                                   gATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCAtcagt                                                                                     >  1:299642/1‑234 (MQ=255)                                                                                       ccAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                                                                                   <  1:285389/184‑1 (MQ=255)                                                                                        cAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGc                                                                              <  1:373441/236‑1 (MQ=255)                                                                                          aGGGCCGCCCTGCGGCCCAATCGCGGTCCAATCGGGTCGCGAATGGCCGACGCCACTCGTGCAGCCAAACGTCTCGCAGCGTACTAACCCATGCACCCCACCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCt                                                                                                                                                                        <  2:76735/144‑1 (MQ=255)                                                                                            ggCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGcc                                                                                                   <  2:490294/211‑1 (MQ=255)                                                                                             gccgccCTGCGGCCAAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACgg                                                                                                            <  1:2204/201‑1 (MQ=255)                                                                                             cccgttcttctgggcctgggtcagggcatggcagatcagggtcaggcggatggctttcaccaggcattGCTCGCAGCGTGCTAAAGCATGCACCCCAGCCCGCTGCGAGAAATGGCTGGTGaaagaca                                                                                                                                                                                     <  2:477512‑M1/60‑4 (MQ=255)                                                                                                         cccAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGCGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGc                                                                 >  1:74277/1‑232 (MQ=255)                                                                                                           cctgggtcagggcatggcagatcagggtcaggcggatgacttacaccaggcatttctcgcagcgtgctgaggtgcaaggtttagcacgctgcgagaAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTg                                                                                                                                                                  <  2:178077‑M2/37‑1 (MQ=255)                                                                                                            ctgggtcagggcatggcagatcagggtcaggcggatggctgtcaccaggcttttctcgcggctggctggggtgcattgtttagcacgcggcgagaAATGCCTGGTGAAAGCCATCCGCCTg                                                                                                                                                                             <  1:221121‑M2/26‑1 (MQ=255)                                                                                                                gcgGTTCAATCGGGTCGCGAATGGCCTACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGc                                                                              <  1:21509/212‑1 (MQ=255)                                                                                                                gcgGCTCAATCGGGTCGCGAATGGCCGCCGACATCCTTGCAGCCAAACGTCTCGAAGCGTGCTAAACCATGCCCCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGc                                                                 <  1:69804/225‑1 (MQ=255)                                                                                                                            cagatcagggtcaggcggatggctttcaccaggcattTCTCGCAGCGTGCTAAACCTTGCACCTCAGCACGCTGCGAGAAATGCCTGGTGTAAGTCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAgg                                                                                                                                                 <  2:178077‑M1/96‑1 (MQ=255)                                                                                                                                       caggcggatggctttcaccaggcattTCTCGCCGCGTGCTAAACAATGCACCCCAGCCAGCCGCGAGAAAAGCCTGGTGACAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAg                                                                                                                                                  <  1:221121‑M1/95‑1 (MQ=255)                                                                                                                                        ccGACGACAGTCTTGCAGCCAAACGTCTCGCAGCGTGCTAACCCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGgcgc                                                                                                                                <  2:19415/138‑1 (MQ=255)                                                                                                                                               tgtctttcaccagccatttctcgcagcgggctggggtgcatgctttagcacgctgcgagcAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                                                                                   <  2:477512‑M2/68‑1 (MQ=255)                                                                                                                                                           cAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGAc                                                                                <  1:209431/167‑1 (MQ=255)                                                                                                                                                            aaaCGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                                                                                   >  1:472944/1‑115 (MQ=255)                                                                                                                                                            aaaCGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACggg                                                                                                                                   <  2:472940/115‑1 (MQ=255)                                                                                                                                                                        GCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGGCCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGAc                                                                                >  1:178081‑M1/1‑154 (MQ=255)                                                                                                                                                                               aaaCCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGCGTGCAACTGCTGAGTGCGCCAGAGCGGCGGGCTTGCGAGTCGGCAGCGTGGTTCACGGGGGCa  >  1:449769/1‑225 (MQ=255)                                                                                                                                                                                        aCCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCt                                                                                                                                                                        <  2:13058/50‑1 (MQ=255)                                                                                                                                                                                        aCCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCt                                                                                                                                                                        >  1:13058/1‑50 (MQ=255)                                                                                                                                                                                                        agaAATGCCTGGTGAAAGCAATCCGCCTGACCCTGATCAGCCATGCACTGACCCCGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTGGCCCATCAGTCAGACGCCGAcc                                                                         <  2:288323‑M2/126‑1 (MQ=255)                                                                                                                                                                                                           |                                                                                                                                                                                                     GGCGGCAACGCCAGCAGCTCGGGGGCAAACACGTATAACCAGCCGGGCAGGGCGGTGTTTGCTGCGCTGAATATCAACTTCTGATCCCAAGGGCCGCCCTGCGGCCCAATCGCGGTTCAATCGGGTCGCGAATGGCCGACGACATTCTTGCAGCCAAACGTCTCGCAGCGTGCTAAACCATGCACCCCAGCCCGCTGCGAGAAATGCCTGGTGAAAGCCATCCGCCTGACCCTGATCTGCCATGCCCTGACCCAGGCCCAGAAGAACGGGCGCCTGCACCATACGGATGACGGCATCCTGCCGCTAGCCCATCAGTCAGACGCCGACCGTTCAGGCGTGCAACTGCTGAGTGCGCCAGAGCGGCGGGCTTGCGAGACGGCAGCGTGGTTAACGGGGGCA  >  AE015451/2559892‑2560290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.