New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3910887 =	31 (1.200)	3 (0.120)	3/304	NT	9.7%	coding (197/840 nt)	PP_3451	conserved exported protein of unknown function
	?	AE015451	3910927 =	26 (1.060)					coding (237/840 nt)	PP_3451	conserved exported protein of unknown function

CAACGGTGTGCTGGTCGGTGCGGAGATGACCTTCTGATGCGTACGCTCATCGCCTTCTGCCTGCTGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGT  >  AE015451/3910655‑3911091                                                                                                                                                                                                                                         |                                                                                                                                                                                                             cAACGGTGTGCTGGTCGGTGCGGAGATGACCTTCTGATGCGTACGCTCATCGCCTTCTGCCTGCTGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTcggcg                                                                                                                                                                                                            >  1:169305/1‑235 (MQ=255)      cgcgccgttcggtctcgcgcagatgctggtcgtccagctccatgggcaggtaccagccgtccactggcaactgccaggcctggcgcagttgctggtactggctgagcgagcgccccagctgcgctttccagtagctgttcaggccctcgccatccagctcgtcgaggcgctggtagtaggccgggtccatgtacagccccagcaccagctgcaagccctcggcacgcGCGGTg                                                                                                                                                                                                         >  2:274092‑M1/228‑233 (MQ=255)                     cGGAGATGACCTTCTGATGCGTACGCTCATCGCCTTCTGCCTGCTGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGcc                                                                                                                                                                                        <  1:503601/235‑1 (MQ=255)                         gaTGACCTTCTGATGCGTACGCTCATCGCCTTCTGCCTGCTGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCACTGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGgctggctg                                                                                                                                                                                           >  1:87748/1‑228 (MQ=255)                                                   gcaggtaccagccgtccactggcaactgccaggcctggcgcagttgctggtactggctgagcgagcgccccagctgcgctttccagtagctgttcaggccctcgccatccagctcgtcgaggcgctggtagtaggccgggtccatgtacagccccagcaccagctgcaagccctccgcacgcgcg                                                                                                                                                                                                            <  2:182319‑M1/3‑1 (MQ=255)                                                                 tgGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTg                                                                                                                                           <  1:160232/236‑1 (MQ=255)                                                                   gCCCTGTGCCTACCGGCCACCGCTAACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTGGGCGGTGcc                                                                                                                                                                                                       >  1:246655/1‑174 (MQ=255)                                                                       tgtgCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGTCTGGCTGGTCAACAGCCTGCGCa                                                                                                                                                                           >  1:349758/1‑198 (MQ=255)                                                                             tACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCACCCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATg                                                                                                                               <  1:496564/236‑1 (MQ=255)                                                                                cGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATgg                                                                                                                              <  2:491139/234‑1 (MQ=255)                                                                                cGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGa                                                                                                                             <  1:267007/235‑1 (MQ=255)                                                                                 ggCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTgc                                                                                                                                                                              <  2:405462/185‑1 (MQ=255)                                                                                 ggCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTgc                                                                                                                                                                              >  1:405466/1‑185 (MQ=255)                                                                                  gCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGAccc                                                                                                                          >  1:238939/1‑236 (MQ=255)                                                                                      ccGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACcgc                                                                                                                                                                       >  2:511816/1‑187 (MQ=255)                                                                                                        tCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGt                                                                                                                                               <  1:98016/193‑1 (MQ=255)                                                                                                                    tCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCt                                                                                                        >  2:175985/1‑220 (MQ=255)                                                                                                                        ccGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTa                                                                                                                                   >  2:325068/1‑189 (MQ=255)                                                                                                                         cgcgATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGCGGGCTTGCAGCTGGTGCTGGGGCTGTACCTGGACCCGGCCTACTACCCGCGCCt                                                                                                        >  1:59369/1‑215 (MQ=255)                                                                                                                         cgcgATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTgg                                                                                                                                                <  1:219263/175‑1 (MQ=255)                                                                                                                              tGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTcgacggg                                                                                                 >  1:18194/1‑215 (MQ=255)                                                                                                                                                                  gCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCgctcgctc                                           <  1:175989/235‑1 (MQ=255)                                                                                                                                                                           cgcgGCCCATGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGTTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATg                                                                                          <  2:155767/179‑1 (MQ=255)                                                                                                                                                                             cgGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCt                                                                                                                                            >  2:252079/1‑127 (MQ=255)                                                                                                                                                                                  cAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACt                          <  1:511820/236‑1 (MQ=255)                                                                                                                                                                                  ataagagacagggtccatgtacagccccagcaccagctgcaagccctcggcacgcGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACt                          >  1:230911‑M1/56‑236 (MQ=255)                                                                                                                                                                                     ggTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGcgctcgct                                            >  1:442645/1‑215 (MQ=255)                                                                                                                                                                                               tccatgtacagccccagcaccagctgcaagccctcggcacgcGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTgcgc                                                                                                                                                                            <  2:340838‑M1/35‑1 (MQ=255)                                                                                                                                                                                                       gggCAATGGAGGGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTcgacg                                                                                                   <  2:378957/140‑1 (MQ=255)                                                                                                                                                                                                          cAATGGAGTGCCTATGGCGACCGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAg                               <  2:464841/207‑1 (MQ=255)                                                                                                                                                                                                           cccagcaccagctgcaagccctcggcacgcGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGACGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGcc                                                                                                                      <  2:230907‑M1/89‑1 (MQ=255)                                                                                                                                                                                                           aaTGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGgc                                                   >  2:295413/1‑186 (MQ=255)                                                                                                                                                                                                                     cTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGcc                >  2:187277/1‑211 (MQ=255)                                                                                                                                                                                                                     cTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGcc                <  1:187281/211‑1 (MQ=255)                                                                                                                                                                                                                               ggCGATTTCGGCGGTGCCCAg                                                                                                                                                                                                    >  2:101803/2‑21 (MQ=255)                                                                                                                                                                                                                                 cGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAg                                         <  2:425440/174‑1 (MQ=255)                                                                                                                                                                                                                                 cGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAg                                         >  1:425444/1‑174 (MQ=255)                                                                                                                                                                                                                                        ggcggTGCCCGGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGt         <  2:264190/199‑1 (MQ=255)                                                                                                                                                                                                                                        ggcggTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGt  <  2:238935/206‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                             CAACGGTGTGCTGGTCGGTGCGGAGATGACCTTCTGATGCGTACGCTCATCGCCTTCTGCCTGCTGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGT  >  AE015451/3910655‑3911091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.