New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3910887 =	31 (1.200)	3 (0.120)	3/304	NT	9.7%	coding (197/840 nt)	PP_3451	conserved exported protein of unknown function
	?	AE015451	3910927 =	26 (1.060)					coding (237/840 nt)	PP_3451	conserved exported protein of unknown function

TGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTGCGCGAGACCGAACGGCGCGA  >  AE015451/3910719‑3911154                                                                                                                                                                                                                 |                                                                                                                                                                                                                                    tgGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTg                                                                                                                                                                                                          <  1:160232/236‑1 (MQ=255)             tACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCACCCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATg                                                                                                                                                                                              <  1:496564/236‑1 (MQ=255)                cGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATgg                                                                                                                                                                                             <  2:491139/234‑1 (MQ=255)                cGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGa                                                                                                                                                                                            <  1:267007/235‑1 (MQ=255)                  gCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGAccc                                                                                                                                                                                         >  1:238939/1‑236 (MQ=255)                            agttgctggtactggctgagcgagcgccccagctgcgctttccagtagctgttcaggccctcgccatccagctcgtcgaggcgctggtagtaggccgggtccatgtacagccccagcaccagctgcaagccctcggcacgcgcggtgcgcaggctgttggccagccagccctgggcaccgcGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCtgtacatggaccctgtctcttat                                                                                                                                                                               >  1:230911‑M2/182‑226 (MQ=255)                                        tCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGt                                                                                                                                                                                                              <  1:98016/193‑1 (MQ=255)                                                    tCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCt                                                                                                                                                                       >  2:175985/1‑220 (MQ=255)                                                        ccGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTa                                                                                                                                                                                                  >  2:325068/1‑189 (MQ=255)                                                         cgcgATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGCGGGCTTGCAGCTGGTGCTGGGGCTGTACCTGGACCCGGCCTACTACCCGCGCCt                                                                                                                                                                       >  1:59369/1‑215 (MQ=255)                                                         cgcgATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTgg                                                                                                                                                                                                               <  1:219263/175‑1 (MQ=255)                                                              tGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTcgacggg                                                                                                                                                                >  1:18194/1‑215 (MQ=255)                                                                                                  gCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCgctcgctc                                                                                                          <  1:175989/235‑1 (MQ=255)                                                                                                           cgcgGCCCATGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGTTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATg                                                                                                                                                         <  2:155767/179‑1 (MQ=255)                                                                                                             cgGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCt                                                                                                                                                                                                           >  2:252079/1‑127 (MQ=255)                                                                                                                  cAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACt                                                                                         <  1:511820/236‑1 (MQ=255)                                                                                                                  ataagagacagggtccatgtacagccccagcaccagctgcaagccctcggcacgcGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACt                                                                                         >  1:230911‑M1/56‑236 (MQ=255)                                                                                                                     ggTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGcgctcgct                                                                                                           >  1:442645/1‑215 (MQ=255)                                                                                                                        ggccgggtccatgtacagccccagcaccagctgcaagccgtcggcacgcgcggtgcgcaggctgttggccagccagccctgggcaccgcGCGTGCCGAGGGCTTGCAGCTGGTGCTggg                                                                                                                                                                                                        <  2:230907‑M2/30‑1 (MQ=255)                                                                                                                                       gggCAATGGAGGGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTcgacg                                                                                                                                                                  <  2:378957/140‑1 (MQ=255)                                                                                                                                          cAATGGAGTGCCTATGGCGACCGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAg                                                                                              <  2:464841/207‑1 (MQ=255)                                                                                                                                           cccagcaccagctgcaagccctcggcacgcGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGACGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGcc                                                                                                                                                                                     <  2:230907‑M1/89‑1 (MQ=255)                                                                                                                                           aaTGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGgc                                                                                                                  >  2:295413/1‑186 (MQ=255)                                                                                                                                                     cTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGcc                                                                               <  1:187281/211‑1 (MQ=255)                                                                                                                                                     cTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGcc                                                                               >  2:187277/1‑211 (MQ=255)                                                                                                                                                                 cGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAg                                                                                                        <  2:425440/174‑1 (MQ=255)                                                                                                                                                                 cGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAg                                                                                                        >  1:425444/1‑174 (MQ=255)                                                                                                                                                                        ggcggTGCCCGGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGt                                                                        <  2:264190/199‑1 (MQ=255)                                                                                                                                                                        ggcggTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGt                                                                 <  2:238935/206‑1 (MQ=255)                                                                                                                                                                           GGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATgg                                                                                                                                                                                             >  2:190444‑M1/1‑79 (MQ=255)                                                                                                                                                                              gcgcaggctgttggccagccagccctgggcaccgcGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGa                                                                                                                                                                                            <  2:340838‑M2/42‑1 (MQ=255)                                                                                                                                                                                            ggcCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCCGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTgcgc                   >  2:490599/1‑232 (MQ=255)                                                                                                                                                                                                       tGCGCGCCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGCCCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTGCGCGAGACCGa           <  1:340842/229‑1 (MQ=255)                                                                                                                                                                                                       tGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCgctcgctc                                                                                                          <  1:333104/134‑1 (MQ=255)                                                                                                                                                                                                         cgcACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCCGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTGCGCGAGACCGAACGGCGCGa  <  1:490603/236‑1 (MQ=255)                                                                                                                                                                                                           caccgcGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTGCGCGAGACCGAACGGcgcg   >  2:274092‑M2/7‑233 (MQ=255)                                                                                                                                                                                                              cgcGCGTGCGGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGTGGACGGCTGGTACCTGc                                                <  2:182319‑M2/182‑1 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                    TGGCCCTGTGCCTACCGGCCACCGCTGACCAGCGCCTGTTCTACCAACCCCTCAACCGCGATGCCAGCGTCACACCCGCCCAGTGGCAGCAACTGTGGCAAGCCACCGCGGCCCAAGGTGGCAAAACCCTGATCGTGCAATGGAGTGCCTATGGCGACAGCGATTTCGGCGGTGCCCAGGGCTGGCTGGCCAACAGCCTGCGCACCGCGCGTGCCGAGGGCTTGCAGCTGGTGCTGGGGCTGTACATGGACCCGGCCTACTACCAGCGCCTCGACGAGCTGGATGGCGAGGGCCTGAACAGCTACTGGAAAGCGCAGCTGGGGCGCTCGCTCAGCCAGTACCAGCAACTGCGCCAGGCCTGGCAGTTGCCAGTGGACGGCTGGTACCTGCCCATGGAGCTGGACGACCAGCATCTGCGCGAGACCGAACGGCGCGA  >  AE015451/3910719‑3911154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.