New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559582	17 (0.660)	4 (0.180)	4/278	NT	21.7%	coding (915/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559562	14 (0.620)					coding (935/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGG  >  AE015451/5559350‑5559801                                                                                                                                                                                                                                          |                                                                                                                                                                                                                            gAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAg                                                                                                                                                                                                                          <  1:272197/236‑1 (MQ=255)                                                                     acacGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCActggtttct                                                                                                                                                                                                                    <  1:513916‑M1/174‑10 (MQ=255)                                                                         gCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCACAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGaa                                                                                                                                                   >  1:293463/1‑235 (MQ=255)                                                                         gCTGGCCCCCGTTGCGCAACTGGCAGACTGGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATAtcgt                                                                                                                                                                                                          <  1:67946/180‑1 (MQ=255)                                                                             acagtCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACg                                                                                                                                                        <  1:463472/222‑1 (MQ=255)                                                                                cTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAg                                                                                                                                                                                                                          >  2:358675/1‑157 (MQ=255)                                                                                cTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGa                                                                                                                                                    >  1:322942/1‑227 (MQ=255)                                                                                     tGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCActggtttctccacggatttgaagaccctggtcacactg                                                                                                                                                                                       <  2:124805‑M1/187‑39 (MQ=255)                                                                                            cTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGccc                                                                                                                                         <  2:308874/226‑1 (MQ=255)                                                                                               gCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGaa                                                                                                                                                            >  2:463468/1‑204 (MQ=255)                                                                                                                          gCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGc                                                                                                                                                                                                    <  1:358679/137‑1 (MQ=255)                                                                                                                                              tGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGCCCGCCCTGGGCGCTCGATGGGCCTCCGCCTGGCACGCacac                                                                                                                                                         >  2:95319/1‑160 (MQ=255)                                                                                                                                                     aGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGt                                                                                                       >  2:168745/1‑203 (MQ=255)                                                                                                                                                                  aCCTCCGCTCGCCCCAGTATGACTAGGGTCTTCAACTCCGTGGAGAAACCATTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGTCTTCGCCTGGCACGAACACGGCGAAcacca                                                                                                                                              <  2:283326/151‑1 (MQ=255)                                                                                                                                                                       cGCTCGCCCCAGTGTGACCAGGGCCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCActggtttctcaacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggaca                                                                                                                                      >  1:306987‑M1/1‑67 (MQ=255)                                                                                                                                                                          tCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCgt                                                                                                                                       <  1:36501/150‑1 (MQ=255)                                                                                                                                                                          ccGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTgtggt                                                                                                                                  <  1:49547/154‑1 (MQ=255)                                                                                                                                                                                cAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCActggtttctccacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggacagtggcgatgcgg                                                                                                                          >  1:238938‑M1/1‑58 (MQ=255)                                                                                                                                                                                      gACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGGCGGCGCCGATATTGTCGTAGCCAca                                                                                                                                                                                                >  2:104965/1‑80 (MQ=255)                                                                                                                                                                                             gTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGa                                                                        <  2:133891/194‑1 (MQ=255)                                                                                                                                                                                                                          cGGTCGCGCCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGCGTGGTAGTGGTAACCACGCAGCCCGCCGACGTc                                                                                                      >  2:377058/1‑136 (MQ=255)                                                                                                                                                                                                                          cGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTcc                                                                                   <  1:286747/154‑1 (MQ=255)                                                                                                                                                                                                                          cGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAgg  >  1:352818/1‑235 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                            GAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCG‑CCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGG  >  AE015451/5559350‑5559801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.