New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559582	17 (0.660)	4 (0.180)	4/278	NT	21.7%	coding (915/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559562	14 (0.620)					coding (935/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGA  >  AE015451/5559350‑5559731                                                                                                                                                                                                                     |                                                                                                                                                                          gAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAg                                                                                                                                                    <  1:272197/236‑1 (MQ=255)                                        tCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGGCTTCAAATCCGTGGAGAAACCAggg                                                                                                                                                                         >  1:83341/1‑174 (MQ=255)                                                                     acacGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCActggtttct                                                                                                                                              <  1:513916‑M1/174‑10 (MQ=255)                                                                         gCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCACAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGaa                                                                             >  1:293463/1‑235 (MQ=255)                                                                         gCTGGCCCCCGTTGCGCAACTGGCAGACTGGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATAtcgt                                                                                                                                    <  1:67946/180‑1 (MQ=255)                                                                             acagtCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACg                                                                                  <  1:463472/222‑1 (MQ=255)                                                                                cTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAg                                                                                                                                                    >  2:358675/1‑157 (MQ=255)                                                                                cTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGa                                                                              >  1:322942/1‑227 (MQ=255)                                                                                     tGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCActggtttctccacggatttgaagaccctggtcacactg                                                                                                                 <  2:124805‑M1/187‑39 (MQ=255)                                                                                            cTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGccc                                                                   <  2:308874/226‑1 (MQ=255)                                                                                               gCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGaa                                                                                      >  2:463468/1‑204 (MQ=255)                                                                                                            cAGAGGGCCGCATTGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCTCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCC                                                                                                                                                                      <  2:241005‑M1/111‑1 (MQ=255)                                                                                                                   ccGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGtggccgggcgcgcccggccactggtttctccacggatttgaagaccctggtcacactg                                                                                                                 >  1:238938‑M2/1‑99 (MQ=255)                                                                                                                          gCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGc                                                                                                                              <  1:358679/137‑1 (MQ=255)                                                                                                                               tGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTTGAGAAACCAGtggccgggcgcgcccggccactggtttctccacggatttgaaggccctggtcacactggggcgagcg                                                                                                        >  1:306987‑M2/1‑87 (MQ=255)                                                                                                                                              tGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGCCCGCCCTGGGCGCTCGATGGGCCTCCGCCTGGCACGCacac                                                                                   >  2:95319/1‑160 (MQ=255)                                                                                                                                                     aGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGt                                 >  2:168745/1‑203 (MQ=255)                                                                                                                                                                  aCCTCCGCTCGCCCCAGTATGACTAGGGTCTTCAACTCCGTGGAGAAACCATTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGTCTTCGCCTGGCACGAACACGGCGAAcacca                                                                        <  2:283326/151‑1 (MQ=255)                                                                                                                                                                       cGCTCGCCCCAGTGTGACCAGGGCCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCActggtttctcaacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggaca                                                                >  1:306987‑M1/1‑67 (MQ=255)                                                                                                                                                                          tCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCgt                                                                 <  1:36501/150‑1 (MQ=255)                                                                                                                                                                          ccGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTgtggt                                                            <  1:49547/154‑1 (MQ=255)                                                                                                                                                                                cAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGtggccgggcgcgcccggccactggtttctccacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggacagtggcgatgcggccctctggcagcaagtctgccagttgcgca                      <  2:124805‑M2/187‑150 (MQ=255)                                                                                                                                                                                cAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCActggtttctccacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggacagtggcgatgcgg                                                    >  1:238938‑M1/1‑58 (MQ=255)                                                                                                                                                                                      gACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGGCGGCGCCGATATTGTCGTAGCCAca                                                                                                                          >  2:104965/1‑80 (MQ=255)                                                                                                                                                                                             gTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGa  <  2:133891/194‑1 (MQ=255)                                                                                                                                                                                                             agaAACCAGtggccgggcgcgcccggccactggtttctccacggatttgaagaccctggtcacactggggcgagcggaggtcgtattgccaactggcggcatctggatgccggacagtggcgatgcggccctctggcagcaagtctgccagttgcgcaacgagggccagcgtgt      <  1:513916‑M2/174‑166 (MQ=255)                                                                                                                                                                                                                     |                                                                                                                                                                          GAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCAAAGTCGGCGCCGATATCGTCGTAGCGACCGCCCTGGGCGATCGATTGGCCTTCGCCTGGCACGAACACGGCGAACACCACGCCCGTGTGGTAGTGGTAACCACGCAGCTCGCCGAGGTCGAAGTACAGCGGCAGGTCCGGGTAGCGCGA  >  AE015451/5559350‑5559731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.