New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6032294 =	23 (0.890)	3 (0.130)	3/296	NT	11.7%	coding (1148/1590 nt)	dppA‑IV	periplasmic dipeptide transport protein
	?	AE015451	6032394 =	24 (1.000)					coding (1248/1590 nt)	dppA‑IV	periplasmic dipeptide transport protein

CCTCAAGGCCGTGTTCGAAGACTCTGCGGTGGCTGCCAATGGCCCCTACCCGCCCAATACCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCG  >  AE015451/6032091‑6032503                                                                                                                                                                                                            |                                                                                                                                                                                                                  ccTCAAGGCCGTGTTCGAAGACTCTGCGGTGGCTGCCAATGGCCCCTACCCGCCCAATACCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCACGCAGATGCTGCAAGCCGACTTg                                                                                                                                                                                    <  1:150834/235‑1 (MQ=255)               tCGAAGACTCTGCGGTGGCTGCCAATGGCCCCTACCCGCCCAATACCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTgg                                                                                                                                                                                                             >  2:427395/1‑196 (MQ=255)                       tctGCGGTGGCTGCCAATGGCCCCTACCCGCCCAATACCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTg                                                                                                                                                                                                              <  1:397588/187‑1 (MQ=255)                                                           aCCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAATGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTg                                                                                                                                                                                    <  2:149970/177‑1 (MQ=255)                                                                        ccAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCgg                                                                                                             >  1:354609/1‑235 (MQ=255)                                                                         cAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGa                                                                                                                                                                                >  2:219076/1‑167 (MQ=255)                                                                         cAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACCTGGCGaa                                                                                                                                                                               >  2:204117/1‑168 (MQ=255)                                                                                 tcgcagaagcgtgcgaagttggtccctgactcgaccgccgcacaggaaaactgcgggctgaggaagttgtccgggtcgccgttgtcgcccgcccagcccatgaacagcaagtcatgctcgccgGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAAt                                                                                                                                                          >  2:365549‑M1/124‑181 (MQ=255)                                                                                 tGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGAc                                                                                                   <  1:256157/236‑1 (MQ=255)                                                                                     cGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAg                                                                                                         >  2:256153/1‑226 (MQ=255)                                                                                                           aaaGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgggctggg                                                                                >  1:64054/1‑229 (MQ=255)                                                                                                                     cccTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGCGCt                                                                                                                                  >  2:335996/1‑169 (MQ=255)                                                                                                                     cccTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAg                                                                                                                                    >  1:166319/1‑167 (MQ=255)                                                                                                                                 aGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAAt                                                                                                                                            <  2:127384/147‑1 (MQ=255)                                                                                                                                 aGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAAt                                                                                                                                            >  1:127388/1‑147 (MQ=255)                                                                                                                                  ggccggccTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgggctgggc                                                                               >  2:278022/1‑207 (MQ=255)                                                                                                                                   gccggccTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGa                                                                                                          <  1:506254/179‑1 (MQ=255)                                                                                                                                    ggcgggctgaggaagttgtctgggtcgccggtgtcgcccgcccagcccatgaacagcaagtcatgctcgccgGCCTTGGCGCGCAGATGCGGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATg                                                                                                                                           >  2:108986‑M1/73‑145 (MQ=255)                                                                                                                                                     ttCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCt                                >  1:249458/1‑235 (MQ=255)                                                                                                                                                         gTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTgggcgggc                                                                           >  1:20253/1‑188 (MQ=255)                                                                                                                                                                  tCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACt                                                     >  1:303312/1‑201 (MQ=255)                                                                                                                                                                     ggACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGATTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgg                                                                                      >  2:484061/1‑165 (MQ=255)                                                                                                                                                                                         cagcaagtcatgctcgccgGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACaa                                                       <  1:490730‑M1/157‑1 (MQ=255)                                                                                                                                                                                          tGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGcc                                                                                                                                                                                          >  1:102045/1‑44 (MQ=255)                                                                                                                                                                                          tGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACt                                                                                                  <  2:124370/132‑1 (MQ=255)                                                                                                                                                                                          tGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACt                                                                                                  >  1:124374/1‑132 (MQ=255)                                                                                                                                                                                                         ccaGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCg  <  1:475833/213‑1 (MQ=255)                                                                                                                                                                                                         ccaGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCg  >  2:475829/1‑213 (MQ=255)                                                                                                                                                                                                            |                                                                                                                                                                                                                  CCTCAAGGCCGTGTTCGAAGACTCTGCGGTGGCTGCCAATGGCCCCTACCCGCCCAATACCTGGAGCTACGCCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCG  >  AE015451/6032091‑6032503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.