New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6032294 =	23 (0.890)	3 (0.130)	3/296	NT	11.7%	coding (1148/1590 nt)	dppA‑IV	periplasmic dipeptide transport protein
	?	AE015451	6032394 =	24 (1.000)					coding (1248/1590 nt)	dppA‑IV	periplasmic dipeptide transport protein

CCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAACGACCAGAGCGTACGCAGCCGGCTGTACCAGCAGGCGCAGACACTGATCCAGC  >  AE015451/6032162‑6032611                                                                                                                                                                                                                                         |                                                                                                                                                                                                                          ccAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCgg                                                                                                                                                                                                                         >  1:354609/1‑235 (MQ=255)          tGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGAc                                                                                                                                                                                                               <  1:256157/236‑1 (MQ=255)              cGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAg                                                                                                                                                                                                                     >  2:256153/1‑226 (MQ=255)                                    aaaGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgggctggg                                                                                                                                                                                            >  1:64054/1‑229 (MQ=255)                                                           ggccggccTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgggctgggc                                                                                                                                                                                           >  2:278022/1‑207 (MQ=255)                                                            gccggccTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGa                                                                                                                                                                                                                      <  1:506254/179‑1 (MQ=255)                                                                            ttgtccgggtcgccgttgtcgcccgcccagcccatgaacagcaagtcatgctcgccggccttggcgcggcggataagctcgccccattcgatcacgcggatttcagccttgataccaatcttcgccaagtcggcttgcagcatctgcgcgccaaggcCGGCGAGCATGACTTGCTg                                                                                                                                                                                                         <  1:490730‑M2/19‑1 (MQ=255)                                                                              ttCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCt                                                                                                                                            >  1:249458/1‑235 (MQ=255)                                                                                  gTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTgggcgggc                                                                                                                                                                                       >  1:20253/1‑188 (MQ=255)                                                                                           tCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACt                                                                                                                                                                 >  1:303312/1‑201 (MQ=255)                                                                                              ggACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGATTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCAtgg                                                                                                                                                                                                  >  2:484061/1‑165 (MQ=255)                                                                                                                  cagcaagtcatgctcgccgGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACaa                                                                                                                                                                   <  1:490730‑M1/157‑1 (MQ=255)                                                                                                                   tGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACt                                                                                                                                                                                                              <  2:124370/132‑1 (MQ=255)                                                                                                                   tGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACt                                                                                                                                                                                                              >  1:124374/1‑132 (MQ=255)                                                                                                                                  ccaGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCg                                                                                                              >  2:475829/1‑213 (MQ=255)                                                                                                                                  ccaGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCg                                                                                                              <  1:475833/213‑1 (MQ=255)                                                                                                                                             GCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCt                                                                               <  1:161704‑M1/233‑1 (MQ=255)                                                                                                                                              CGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCa                                                                                                                                                    <  2:487643‑M1/163‑1 (MQ=255)                                                                                                                                               GCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCTTGATCGAATGGGTCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTgcggcg                                                                                                                                    >  1:175323‑M1/1‑178 (MQ=255)                                                                                                                                                            gCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGCCTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTc                                                                                       <  1:24373/210‑1 (MQ=255)                                                                                                                                                                cattcgatcacgcggatttcagccttgataccaatcttcgccaagtcggcttgccgcatctgcgcgccaaggcCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACACCGGCGACCCAGACAACTTCCTCAGCCCgcc                                                                                                                                                    >  2:108986‑M2/74‑144 (MQ=255)                                                                                                                                                                    ggCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCAccacca                                                        >  1:301124/1‑233 (MQ=255)                                                                                                                                                                             tGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCtgt                                                                                                                                          >  1:440590/1‑142 (MQ=255)                                                                                                                                                                             tGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCtgt                                                                                                                                          <  2:440586/142‑1 (MQ=255)                                                                                                                                                                               atttcagccttgataccaatcttcgccaagtcggcttgcagcatctgcgcgccaaggcCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGa                                                                                                 >  2:365549‑M2/59‑181 (MQ=255)                                                                                                                                                                                                       tCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGgcg                                                                <  2:354605/190‑1 (MQ=255)                                                                                                                                                                                                             ggggCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAACGACCAGAGCGTACGCAGCCGGCTGTACCAGCAGGCGCAGa              <  1:79216/234‑1 (MQ=255)                                                                                                                                                                                                                    gCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCCTCTGCGACAGCCGCCTCGAcc                                                                                   >  2:13921/1‑158 (MQ=255)                                                                                                                                                                                                                      ttATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTCCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAAc                                                      <  1:194442/185‑1 (MQ=255)                                                                                                                                                                                                                        aTCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAggg                                                                       >  1:396958/1‑164 (MQ=255)                                                                                                                                                                                                                        aTCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAACGACCAGAGc                                             >  2:447271/1‑192 (MQ=255)                                                                                                                                                                                                                        aTCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAACGACCAGAGCGTACGCAGCCGGCTGTACCAGCAGGCGCAGACACTGATCcagc  >  1:247994/1‑235 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                          CCAAGGACCTGCCCGGCTACCCGCTGGACCTGAAGAAAGCCAAGGCCCTGCTGGCCAAGGCCGGCCTGGCCGAAGGCTTCAGTACCACCATCTGGACCCGGCCCTCGGGTAGCCTGCTCAACCCCAACCCCAGCCTTGGCGCGCAGATGCTGCAAGCCGACTTGGCGAAGATTGGTATCAAGGCTGAAATCCGCGTGATCGAATGGGGCGAGCTTATCCGCCGCGCCAAGGCCGGCGAGCATGACTTGCTGTTCATGGGCTGGGCGGGCGACAACGGCGACCCGGACAACTTCCTCAGCCCGCAGTTTTCCTGTGCGGCGGTCGAGTCAGGGACCAACTTCGCACGCTTCTGCGACAGCCGCCTCGACCAGCTGATCAGCGCCGGGCGCACCACCAACGACCAGAGCGTACGCAGCCGGCTGTACCAGCAGGCGCAGACACTGATCCAGC  >  AE015451/6032162‑6032611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.