New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	128652 =	22 (0.380)	3 (0.060)	3/310	NT	13.1%	coding (1130/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity
	?	AE015451	128668 =	20 (0.380)					coding (1146/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity

ATGGCGGGGGAGCCATTGGCGAGGATGTTGATGTCGTACTTGGCGTTCTGCCCGACCTTGGCCTTGGCCGGGTCCTCCAGCAGTGGTTTCAGCGCCAGCAGCACGGCCTCGCGGTCCAGCTGGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/128778‑128652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtccagctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGT  >  AE015451/128668‑128873                                                                                                                                                                                                                                                                                                                                               ATGGCGGGGGAGCCATTGGCGAGGATGTTGATGTCGTACTTGGCGTTCTGCCCGACCTGGGCCTTGGCCGGGTCCTCCAGCAGTGGTTTCAGCGCCAGCAGCACGGCCTCGCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGC                                                                                                                                                                                <  1:477473/159‑1                                   CGTACTTGGCGTTCTGCCCGACCTTGGCCTTGGCCGGGTCCTCCAGCAGTGGTTTCAGCGCCAGCAGCACGGCCTCGCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAG                                                                                                                                                                           <  1:77609/130‑1                                                                                                   CAGCACGGCCTCGCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACCACACCAACATCCGCGC                                                                                                                   >  2:705473/1‑122                                                                                                                        cgggcCCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACACCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGT  <  1:263762/209‑1                                                                                                                        CTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGC          >  2:499660/1‑206                                                                                                                               GCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTC                                           >  2:340569/1‑166                                                                                                                                                                                                                                                                                                                                               ATGGCGGGGGAGCCATTGGCGAGGATGTTGATGTCGTACTTGGCGTTCTGCCCGACCTTGGCCTTGGCCGGGTCCTCCAGCAGTGGTTTCAGCGCCAGCAGCACGGCCTCGCGGTCCAGCTGGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/128778‑128652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtccagctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGT  >  AE015451/128668‑128873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.