New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	128652 =	22 (0.380)	3 (0.060)	3/310	NT	13.1%	coding (1130/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity
	?	AE015451	128668 =	20 (0.380)					coding (1146/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity

TTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTC  >  AE015451/128488‑128878                                                                                                                                                                                     |                                                                                                                                                                                                                   tttCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCg                                                                                                                                                                          <  1:370132/223‑1 (MQ=255)        gCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGc                                                                                                                                                       <  1:646075/235‑1 (MQ=255)         ccTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCa                                                                                                                                                      >  1:1032430/1‑235 (MQ=255)          ctggctggAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGa                                                                                                                                                    <  1:460855/236‑1 (MQ=255)                                                      atggcgggggagccattggcgaggatgttgatgtcgtacttggcgttctgcccgacctgggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgcggtccagctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCActgc                                                                                                                                                                                     <  1:477473‑M2/32‑1 (MQ=255)                                                          gaCCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGCGCCCgcgccg                                                                                                                                                                                                        >  2:263759/1‑134 (MQ=255)                                                              accGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGAt                                                                                                <  1:106192/236‑1 (MQ=255)                                                                     tGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGgt                                                                                         <  1:832464/236‑1 (MQ=255)                                                                        gcgcggatgttggtgtggtacttggcgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGtgctg                                                                                                                                                                                                        >  2:705473‑M1/94‑122 (MQ=255)                                                                            ccAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCt                                                                                  <  1:349668/236‑1 (MQ=255)                                                                                    cgcAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACAcc                                                                          <  1:42396/236‑1 (MQ=255)                                                                                        cgtacttggcgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgcggtccagctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTggag                                                                                                                                                                                <  1:77609‑M2/37‑1 (MQ=255)                                                                                                             aGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACt                                                 >  1:164225/1‑236 (MQ=255)                                                                                                                 gcgCCGCGTGAAGCGGCCTATGTGCCGCTGGCCCCCGATTCCGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCCCTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGAt                                                                                                <  1:250625/183‑1 (MQ=255)                                                                                                                  aGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGaca                                                                            <  2:1061046/204‑1 (MQ=255)                                                                                                                  aGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGaca                                                                            >  1:1061049/1‑204 (MQ=255)                                                                                                                    ccGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGc                                          <  1:502873/236‑1 (MQ=255)                                                                                                                          gAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCAc                                       >  1:99143/1‑233 (MQ=255)                                                                                                                                ctccagcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACg                                                                                                                                        <  1:77609‑M1/93‑1 (MQ=255)                                                                                                                                     gcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCCAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCAt                                                                                                      <  1:477473‑M1/127‑1 (MQ=255)                                                                                                                                      gtgCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACAt                           <  2:1032427/233‑1 (MQ=255)                                                                                                                                           gCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCCAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCg                                                              <  1:575070/193‑1 (MQ=255)                                                                                                                                                  cACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGgc               >  2:902937/1‑233 (MQ=255)                                                                                                                                                  cACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAAGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCacc                                                                                                     >  2:571140/1‑145 (MQ=255)                                                                                                                                                        cagcacggcctcgcggtccagctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACCACACCAACATCCgcgc                                                                                                                        >  2:705473‑M2/30‑122 (MQ=255)                                                                                                                                                            aaGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTc  <  1:824147/236‑1 (MQ=255)                                                                                                                                                                             ctggaccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGgc               >  2:499660‑M2/9‑206 (MQ=255)                                                                                                                                                                             cgggcccgCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACACCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGt       <  1:263762‑M2/206‑1 (MQ=255)                                                                                                                                                                             cTGGACCGCGAGGCCGTGCTGCTGGCGCTGGAACCACTGCTGGAGGGCCCGGCCAAGGCCAAGGTCGGGCAGAACGCCCAGTACGa                                                                                                                                       >  2:771591/1‑86 (MQ=255)                                                                                                                                                                                    gCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTc                                                >  2:340569‑M2/2‑166 (MQ=255)                                                                                                                                                                                     |                                                                                                                                                                                                                   TTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTC  >  AE015451/128488‑128878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.