New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	128652 =	22 (0.380)	3 (0.060)	3/310	NT	13.1%	coding (1130/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity
	?	AE015451	128668 =	20 (0.380)					coding (1146/2748 nt)	polA	DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity

TTGCCCCGGCCGTGGAGCCTGCGGTCAAGGTCGAGGCCAAATACGAAACCATTCTCGACCAGGCCCGTTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTC  >  AE015451/128421‑128878                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   ttGCCCCGGCCGTGGAGCCTGCGGTCAAGGTCGAGGCCAAATACGAAACCATTCTCGACCAGGCCCGTTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCg                                                                                                                                                                                                                                   <  1:1056205/233‑1 (MQ=255)     cccGGCCGTGGAGCCTGCGGTCAAGGTCGAGGCCAAAGACGAAACCATTCTCGACCAGGCCCGTTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAg                                                                                                                                                                                                                             <  1:3621/235‑1 (MQ=255)                          acttctgcgccaggctgtccatgtcatgacgggtggcggtggagttcagcacgtacgactcgagcatggtgtcgtaggccacaccgcgcatctcgatggcgggggagccattggcgaggatgttgatgtcgtacttggtgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgcgggcccg                                                                                                                                                                                                                             <  1:263762‑M1/8‑6 (MQ=255)                                  gccaggctgtccatgtcatgacgggtggcggtggagttcagcacgtacgactcgagcatggtgtcgtaggccacaccgcgcatctcgatggcgggggagccattggcgaggatgttgatgtcgtacttggcgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgCGGTCCAg                                                                                                                                                                                                                             >  2:499660‑M1/199‑206 (MQ=255)                                                            cAGGCCCGTTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTc                                                                                                                                                                                                                                >  2:106190/1‑177 (MQ=255)                                                                   gagttcagcacgtacgactcgagcatggtgtcgtaggccacaccgcgcatctcgatggcgggggagccattggcgaggatgttgatgtcgtacttggcgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgc                                                                                                                                                                                                                                    >  2:340569‑M1/166‑166 (MQ=255)                                                                    tttCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCg                                                                                                                                                                          <  1:370132/223‑1 (MQ=255)                                                                           gCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGc                                                                                                                                                       <  1:646075/235‑1 (MQ=255)                                                                            ccTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCa                                                                                                                                                      >  1:1032430/1‑235 (MQ=255)                                                                             ctggctggAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAg                                                                                                                                                                                                                             <  1:899157/163‑1 (MQ=255)                                                                             ctggctggAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGa                                                                                                                                                    <  1:460855/236‑1 (MQ=255)                                                                                                                             gaCCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGCGCCCgcgccg                                                                                                                                                                                                        >  2:263759/1‑134 (MQ=255)                                                                                                                                 accGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGAt                                                                                                <  1:106192/236‑1 (MQ=255)                                                                                                                                        tGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGgt                                                                                         <  1:832464/236‑1 (MQ=255)                                                                                                                                           gcgcggatgttggtgtggtacttggcgttctgcccgaccttggccttggccgggtcctccagcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGtgctg                                                                                                                                                                                                        >  2:705473‑M1/94‑122 (MQ=255)                                                                                                                                               ccAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCt                                                                                  <  1:349668/236‑1 (MQ=255)                                                                                                                                                       cgcAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACAcc                                                                          <  1:42396/236‑1 (MQ=255)                                                                                                                                                                                aGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACt                                                 >  1:164225/1‑236 (MQ=255)                                                                                                                                                                                    gcgCCGCGTGAAGCGGCCTATGTGCCGCTGGCCCCCGATTCCGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCCCTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGAt                                                                                                <  1:250625/183‑1 (MQ=255)                                                                                                                                                                                     aGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGaca                                                                            <  2:1061046/204‑1 (MQ=255)                                                                                                                                                                                     aGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGaca                                                                            >  1:1061049/1‑204 (MQ=255)                                                                                                                                                                                       ccGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGc                                          <  1:502873/236‑1 (MQ=255)                                                                                                                                                                                             gAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCAc                                       >  1:99143/1‑233 (MQ=255)                                                                                                                                                                                                   ctccagcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACg                                                                                                                                        <  1:77609‑M1/93‑1 (MQ=255)                                                                                                                                                                                                        gcagtggtttcagcgccagcagcacggcctcgCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCCAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCAt                                                                                                      <  1:477473‑M1/127‑1 (MQ=255)                                                                                                                                                                                                         gtgCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACAt                           <  2:1032427/233‑1 (MQ=255)                                                                                                                                                                                                              gCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCCAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCg                                                              <  1:575070/193‑1 (MQ=255)                                                                                                                                                                                                                     cACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGgc               >  2:902937/1‑233 (MQ=255)                                                                                                                                                                                                                     cACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAAGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCacc                                                                                                     >  2:571140/1‑145 (MQ=255)                                                                                                                                                                                                                               aaGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTc  <  1:824147/236‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   TTGCCCCGGCCGTGGAGCCTGCGGTCAAGGTCGAGGCCAAATACGAAACCATTCTCGACCAGGCCCGTTTCGACGCCTGGCTGGAGAAGCTGCGCCAGGCACCGCTGTTTGCCTTCGACACCGAGACCACCGGCCTGGACGCCCAGCAGGCGCAGTTGGTCGGCCTGTCCTTCGCAGTCGAGCCGCATGAAGCGGCCTATGTGCCGCTGGCCCACGATTACGAAGGCGCGCCGGTCCAGCTGGACCGCGAGGCCGTGCTGCTGGCGCTGAAACCACTGCTGGAGGACCCGGCCAAGGCCAAGGTCGGGCAGAACGCCAAGTACGACATCAACATCCTCGCCAATGGCTCCCCCGCCATCGAGATGCGCGGTGTGGCCTACGACACCATGCTCGAGTCGTACGTGCTGAACTCCACCGCCACCCGTCATGACATGGACAGCCTGGCGCAGAAGTACCTC  >  AE015451/128421‑128878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.