New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 204045	NA (NA)	4 (0.070)	3/326	NT	18.1%	coding (9551/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	= 204062	19 (0.330)					coding (9568/26049 nt)	PP_0168	putative surface adhesion protein

CTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCtcacgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/203814‑204045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATCGATTTG  <  AE015451/204062‑203821                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACTCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAC                                                                                                                                                                                                                                                <  1:660104/236‑1   GTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGA                                                                                                                                                                                                                                              >  1:296927/1‑236   GTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAC                                                                                                                                                                                                                                                <  2:636381/234‑1     GATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGCTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCCGGTCAAGGTCACTATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACG                                                                                                                                                                                                                                               <  2:574176/233‑1      ATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTTACGA                                                                                                                                                                                                                                              <  2:588710/233‑1                    AACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGATCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAC                                                                                                                                                                                                                                                <  2:555760/217‑1                         TTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGA                                                                                                                                                                                                                                              <  1:245309/214‑1                                   GGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACC                                                                                                                                                                                                                                            >  2:109602/1‑206                                                                                                    gGCCGGGTACCCCAGGCAAGCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAC                                                                                                                                                                                                                                                <  2:2325/136‑1                                                                                                                   GCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGCTCACGTCCACCAGCCGCTGGCCCACGAC                                                                                                                                                                                                                                             >  2:27117/1‑125                                                                                                                          gaGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGTACAGTGAAGGTCGGTTTGACGTTC                                                                                                                                                                                      >  2:667222/3‑173                                                                                                                          GGGCGGCAGCAACGAAGGCGACCTGGTCAAGATCAACATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACG                                                                                                                                                                                                                                               <  2:86870/116‑1                                                                                                                                gAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACG                                                                                                                                                                                                                                               <  1:475219/109‑1                                                                                                                                   CAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGA                                                                                                                                                                                                                                              <  2:768192/108‑1                                                                                                                                                                          CCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGA                                                                         <  1:667225/234‑1                                                                                                                                                                                                              CACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTG                                                                                                                                                                     <  2:517506/106‑1                                                                                                                                                                                                              CACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTG                                                                                                                                                                     >  1:517509/1‑106                                                                                                                                                                                                                                       gggCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTT                      <  1:1045663/221‑1                                                                                                                                                                                                                                          CACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATC        >  1:718706/1‑235                                                                                                                                                                                                                                          CACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTC                                             >  2:986178/1‑198                                                                                                                                                                                                                                          CACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTT                                                                                                                                                >  2:178780/1‑99                                                                                                                                                                                                                                          CACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTT                                                                                                                                                <  1:178782/99‑1                                                                                                                                                                                                                                            CGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCAGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGGACCAGGCTCGCCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAG                                                         >  1:248408/1‑184                                                                                                                                                                                                                                              ACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGACGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCGGGGGTACCAGGCTCGg                                                                                           >  2:75081/1‑147                                                                                                                                                                                                                                              ACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGT                                                                  >  1:367462/1‑173                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAGGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTG                                                                                                                             >  2:610693/1‑113                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTGCCGACGTCCGCACCTTCAACGGTTGCGATCGATTT   >  1:748837/1‑235                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATCGATTTG  <  1:1084347/236‑1                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATCGATTTG  >  1:523690/1‑236                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATCGATTT   >  1:941057/1‑235                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGG                                                                                                                                                                <  2:1087339/78‑1                                                                                                                                                                                                                                               CCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGG                                                                                                                                                                >  1:1087342/1‑78                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCtcacgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/203814‑204045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCTGCCGCCCGGGTTGCCTGGGGTACCAGGCTCGTCGGTGACGGTAGTGCTGACCGGCGTCTTGTCCAGCGTCAGTTGCTCGAACTTACCGACGTCCGCACCTTCAACGGTTGCGATCGATTTG  <  AE015451/204062‑203821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.