New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 204045	NA (NA)	4 (0.070)	3/326	NT	18.1%	coding (9551/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	= 204062	19 (0.330)					coding (9568/26049 nt)	PP_0168	putative surface adhesion protein

CAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGG  >  AE015451/203821‑204272                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                    cAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          <  1:1084347‑M2/236‑1 (MQ=255) cAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          >  1:523690‑M2/1‑236 (MQ=255)  aaaTCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          >  1:941057‑M2/1‑235 (MQ=255)  aaaTCGATCGCAACCGTTGAAGGTGCGGACGTCGGCAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          >  1:748837‑M2/1‑235 (MQ=255)       gatcgCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTG                                                                                                                                                                                                                     >  1:718706‑M2/1‑235 (MQ=255)                     aaGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGccc                                                                                                                                                                                                                  <  1:1045663‑M2/224‑4 (MQ=255)                                            gAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTG                                                                                                                                                                                                                     >  2:986178‑M2/1‑198 (MQ=255)                                                        cTGGACAAGACGCCGGTCAGCACTACCGTCACCGGCGAGCCTGGTCCCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACTGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCG                                                                                                                                                                                                                       >  1:248408‑M2/1‑184 (MQ=255)                                                                 aCGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGT                                                                                                                                                                                                                         >  1:367462‑M2/1‑173 (MQ=255)                                                                        tCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctgg                                                                                                                                                     <  1:667225‑M2/234‑64 (MQ=255)                                                                                          ccgagCCTGGTACCCCCGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGT                                                                                                                                                                                                                         >  2:75081‑M2/2‑148 (MQ=255)                                                                                                                            caACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          >  2:610693‑M2/1‑113 (MQ=255)                                                                                                                                               aaGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTG                                                                                                                                                                                                                     <  1:178782‑M2/99‑1 (MQ=255)                                                                                                                                               aaGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTG                                                                                                                                                                                                                     >  2:178780‑M2/1‑99 (MQ=255)                                                                                                                                                         tCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGc                                                                      >  1:35197/1‑232 (MQ=32)                                                                                                                                                            cGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGc                                                                               >  2:984744/1‑220 (MQ=32)                                                                                                                                                               ccGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          >  1:1087342‑M2/1‑78 (MQ=255)                                                                                                                                                               ccGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGG                                                                                                                                                                                                                          <  2:1087339‑M2/78‑1 (MQ=255)                                                                                                                                                                    cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtg                                                                                                                                                                                         <  2:517506‑M2/106‑28 (MQ=255)                                                                                                                                                                    cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtg                                                                                                                                                                                         >  1:517509‑M2/1‑79 (MQ=255)                                                                                                                                                                            ggTAGCCGCGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCACCAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGtt                                                 <  1:151637/234‑1 (MQ=18)                                                                                                                                                                             gTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTggg                                              <  1:331157/236‑1 (MQ=33)                                                                                                                                                                             gTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTggg                                              <  1:866536/236‑1 (MQ=35)                                                                                                                                                                                   gagaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGc                                        >  1:439940/1‑236 (MQ=34)                                                                                                                                                                                    agaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGAc                                                                   >  2:808411/1‑208 (MQ=32)                                                                                                                                                                                     gaACGTCAAACCGACCTTCACTGTACACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgctc                                                                                                     >  2:667222‑M2/1‑62 (MQ=255)                                                                                                                                                                                                             tCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTg                                                                          >  2:772386/1‑176 (MQ=17)                                                                                                                                                                                                             tCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTg                                                                          <  1:772389/176‑1 (MQ=21)                                                                                                                                                                                                                 gTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCtt                                                                <  2:1069422/182‑1 (MQ=34)                                                                                                                                                                                                                    aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGAcacc               >  1:501190/1‑228 (MQ=255)                                                                                                                                                                                                                    aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACcgacga       >  1:442888/1‑236 (MQ=255)                                                                                                                                                                                                                    aaCCAGCCGCTGGCGCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCACCAAGGCCGGTGAACCCCGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACcgacga       <  1:292199/236‑1 (MQ=255)                                                                                                                                                                                                                         gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAgtgg  >  1:420302/1‑236 (MQ=37)                                                                                                                                                                                                                          ccGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAgtg   <  1:763885/234‑1 (MQ=255)                                                                                                                                                                                                                              tGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGGGGAt                           >  1:126626/1‑206 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                    CAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGG  >  AE015451/203821‑204272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.