New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 204045	NA (NA)	4 (0.070)	3/326	NT	18.1%	coding (9551/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	= 204062	19 (0.330)					coding (9568/26049 nt)	PP_0168	putative surface adhesion protein

TCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCC  >  AE015451/203892‑204294                                                                                                                                                                           |                                                                                                                                                                                                                                         tCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctgg                                                                                                                                                                           <  1:667225‑M2/234‑64 (MQ=255)                                                                                  tCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGc                                                                                            >  1:35197/1‑232 (MQ=32)                                                                                     cGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGc                                                                                                     >  2:984744/1‑220 (MQ=32)                                                                                             cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtg                                                                                                                                                                                                               <  2:517506‑M2/106‑28 (MQ=255)                                                                                             cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtg                                                                                                                                                                                                               >  1:517509‑M2/1‑79 (MQ=255)                                                                                                     ggTAGCCGCGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCACCAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGtt                                                                       <  1:151637/234‑1 (MQ=18)                                                                                                      gTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTggg                                                                    <  1:331157/236‑1 (MQ=33)                                                                                                      gTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTggg                                                                    <  1:866536/236‑1 (MQ=35)                                                                                                            gagaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGc                                                              >  1:439940/1‑236 (MQ=34)                                                                                                             agaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGAc                                                                                         >  2:808411/1‑208 (MQ=32)                                                                                                              gaACGTCAAACCGACCTTCACTGTACACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgctc                                                                                                                           >  2:667222‑M2/1‑62 (MQ=255)                                                                                                                                      tCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTg                                                                                                >  2:772386/1‑176 (MQ=17)                                                                                                                                      tCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTg                                                                                                <  1:772389/176‑1 (MQ=21)                                                                                                                                          gTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCtt                                                                                      <  2:1069422/182‑1 (MQ=34)                                                                                                                                             aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGAcacc                                     >  1:501190/1‑228 (MQ=255)                                                                                                                                             aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACcgacga                             >  1:442888/1‑236 (MQ=255)                                                                                                                                             aaCCAGCCGCTGGCGCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCACCAAGGCCGGTGAACCCCGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACcgacga                             <  1:292199/236‑1 (MQ=255)                                                                                                                                                  gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAgtgg                        >  1:420302/1‑236 (MQ=37)                                                                                                                                                   ccGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAgtg                         <  1:763885/234‑1 (MQ=255)                                                                                                                                                       tGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGGGGAt                                                 >  1:126626/1‑206 (MQ=255)                                                                                                                                                              cGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAg                           <  1:446607/221‑1 (MQ=39)                                                                                                                                                                  cTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAGGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTTGACGCCACTGGTGCGACCTCCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGAc           <  2:1012592/233‑1 (MQ=255)                                                                                                                                                                  cTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGACcg         <  1:413463/235‑1 (MQ=255)                                                                                                                                                                    ggTCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtcc                                    >  2:109602‑M2/1‑8 (MQ=255)                                                                                                                                                                     gTCGTGGgccagcggctggtggacgtgagcagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgc                                                                                                                    >  2:27117‑M2/1‑7 (MQ=255)                                                                                                                                                                      tCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaacggttgcgatcgatttgatcac    >  1:296927‑M2/1‑6 (MQ=255)                                                                                                                                                                      tCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaa                          <  1:245309‑M2/214‑209 (MQ=255)                                                                                                                                                                      tCGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttg                                                                                                                                    <  2:768192‑M2/108‑103 (MQ=255)                                                                                                                                                                      tCGTAAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaacggttgcgatcgatttgat       <  2:588710‑M2/233‑228 (MQ=255)                                                                                                                                                                       cGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatgttgatcttgaccaggtcgccttcgttgctgccgccc                                                                                                                           <  2:86870‑M2/116‑112 (MQ=255)                                                                                                                                                                       cGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctc                                                                                                                                 <  1:475219‑M2/110‑106 (MQ=255)                                                                                                                                                                       cGTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatagtgaccttgaccgggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgagcttaccgacgtccgcaccttcaacggttgcgatcgatttgatc      <  2:574176‑M2/233‑229 (MQ=255)                                                                                                                                                                        gTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaacggttgcgatcgatttgatcac    <  2:636381‑M2/234‑231 (MQ=255)                                                                                                                                                                        gTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggagtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaacggttgcgatcgatttgatcacag  <  1:660104‑M2/236‑233 (MQ=255)                                                                                                                                                                        gTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctggtcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccggcttgcctggggtacccggcc                                                                                                     <  2:2325‑M2/137‑134 (MQ=255)                                                                                                                                                                        gTGAgccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggctaccgaagtctgatcggccgtgatggtgaccttgaccaggtcgccttcgttgctgccgcccgggttgcctggggtaccaggctcgtcggtgacggtagtgctgaccggcgtcttgtccagcgtcagttgctcgaacttaccgacgtccgcaccttcaacggtt                     <  2:555760‑M2/217‑214 (MQ=255)                                                                                                                                                                        gTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGACCGCGAccc   >  1:1076765/1‑235 (MQ=255)                                                                                                                                                                        gTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGACCGCGAccc   >  1:980762/1‑235 (MQ=255)                                                                                                                                                                           |                                                                                                                                                                                                                                         TCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCC  >  AE015451/203892‑204294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.