New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	689649 =	59 (1.020)	3 (0.050)	3/324	NT	5.1%	coding (695/714 nt)	PP_0590	Transcriptional regulator, ArsR family
	?	AE015451	689680 =	56 (1.030)					intergenic (+12/+9)	PP_0590/PP_0591	Transcriptional regulator, ArsR family/Adenine deaminase

TCTGCGTGTTCGACCATATGAGCCAGCACAACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/689891‑689649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgtcgTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTTGTGCTGGCTCATATGGTCGAAC  >  AE015451/689680‑689884                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCTGCGTGTTCGACCATATGAGCCAGCACAACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGC                                                                                                                                                                                                                      >  1:654632/1‑236      GTGTTCGACCATATGAGCCAGCACAACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGT                                                                                                                                                                                                                 >  1:975536/1‑236        GTTCGACCATATGAGCCAGCACAACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCCACCTCG                                                                                                                                                                                                               >  1:1083827/1‑236                              AACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAAC                                                                                                                                                                                                                   <  2:412478/210‑1                                                                     GTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCc                                                                                                                                                  >  1:513282/1‑235                                                                           TCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGATCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGTCGTCATGCTACTCAAACCAG                                                                                                                                                                                             <  2:583334/187‑1                                                                                       GCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGG                                                                                                                                                                 <  2:513279/203‑1                                                                                             TTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACG                                                                                                                                                                                                                  <  2:404256/148‑1                                                                                                                                                                                                                                           GCAACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTT                        <  1:540152/192‑1                                                                                                                                                                                                                                           GCAACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTT                        >  2:540149/1‑192                                                                                                                                                                                                                                              ACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTTGTGCTGGCTCATATGGTCGAAC  >  2:560578/1‑211                                                                                                                                                                                                                                              ACGTCGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGA                                        <  2:549953/173‑1                                                                                                                                                                                                                                                  CGTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTTGTGCTGGCTCATATGGTCG     >  1:122818/1‑204                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCTGCGTGTTCGACCATATGAGCCAGCACAACATCCTCGACATGCTCGAGCGTGGTGTGAAAGTCACCGTCAACTCGGACGACCCGGCCTACTTCGGTGGCTACGTCACGGAGAACTTCCACGCTCTGCATACCCACTTGGGCATGACCGAAGACCAGGCACGTCGCCTGGCGCAGAACAGCCTGGACGCACGGCTGGTTTGAGTAGCATGACGACGTTGCGCTCAACCGACCTGCAACGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/689891‑689649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgtcgTCATGCTACTCAAACCAGCCGTGCGTCCAGGCTGTTCTGCGCCAGGCGACGTGCCTGGTCTTCGGTCATGCCCAAGTGGGTATGCAGAGCGTGGAAGTTCTCCGTGACGTAGCCACCGAAGTAGGCCGGGTCGTCCGAGTTGACGGTGACTTTCACACCACGCTCGAGCATGTCGAGGATGTTGTGCTGGCTCATATGGTCGAAC  >  AE015451/689680‑689884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.