New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 740527	36 (0.620)	5 (0.090)	4/324	NT	12.6%	coding (100/1209 nt)	pilC	Type 4 fimbrial assembly protein PilC
	?	AE015451	= 740537	35 (0.640)					coding (90/1209 nt)	pilC	Type 4 fimbrial assembly protein PilC

GCCCGAGGCCACATCCTGTTTCAATCTTTCCAGCAGCGCCGCCTGCGCCGCATCGCAACCACTGCGGCCCATCACCTCGAACGCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/740291‑740527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccggcTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTTGCCAAAGCGGCGCGAAAAGGCTGACCCGGCGGGGTTCAGCCGGCAGTT  <  AE015451/740537‑740412                                                                                                                                                                                                                                                                                                                                                                             GCCCGAGGCCACATCCTGTTTCAATCTTTCCAGCAGCGCCGCCTGCGCCGCATCGCAACCACTGCGGCCCATCACCTCGAACGCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCG                                                                                                                                  <  1:437860/235‑1                           TTTCCAGCAGCGCCGCCTGCGCCGCATCGCAACCACTGCGGCCCATCACCTCGAACGCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGcgcccg                                                                                                       >  1:838573/1‑230                                   AGCGCCGCCTGCGCCGCATCGCAACCACTGCGGCCCATCACCTCGAACGCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGcg                                                                                                           <  2:838570/224‑3                                                                                   GCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCG                                                                                                                                  <  1:869395/153‑1                                                                                   GCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCG                                                                                                                                  >  2:869392/1‑153                                                                                                       GGCCTTGAGCAACGTCGCCAACTGCCGGCTGACCCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGC                                                                                                                                <  2:96197/135‑1                                                                                                                                                                                AACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGG                                                                                                                                 >  1:764877/1‑61                                                                                                                                                                                          CGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTTGCCAAAGCGGCGCGAAAAGGCTGACCCGGCGGGGg               >  1:485810/1‑164                                                                                                                                                                                                  GGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTT                                                  >  1:789998/1‑122                                                                                                                                                                                                                         GCCCTGGCGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTTGCCAAAGCGGCGCGCAAAGGCTGACCCGGCGG                  >  2:64327/1‑131                                                                                                                                                                                                                                CGAATCAGCCCGGCTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTTGCCAAAGCGGCGCGAAAAGGCTGACCCGGCGGGGTTCAGCCGGCAGTT  >  1:91959/1‑140                                                                                                                                                                                                                                                                                                                                                                             GCCCGAGGCCACATCCTGTTTCAATCTTTCCAGCAGCGCCGCCTGCGCCGCATCGCAACCACTGCGGCCCATCACCTCGAACGCCTGCAGCAGCGGCACGCCGGCCTTGAGCAACGTCGCCAACTGCCGGCTGAACCCCGCCGGGTCAGCCTTTTCGCGCCGCTTTGGCAAGCTGAACGCCAGCCCGCTGGCCGGCCGCAAACTCGCCACCGTGATGCCCTGGCGAATCAGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/740291‑740527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccggcTTATGTGCGCGCCGGGCTGATTCGCCAGGGCATCACGGTGGCGAGTTTGCGGCCGGCCAGCGGGCTGGCGTTCAGCTTGCCAAAGCGGCGCGAAAAGGCTGACCCGGCGGGGTTCAGCCGGCAGTT  <  AE015451/740537‑740412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.