New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	818587 =	64 (1.110)	5 (0.090)	5/330	NT	7.5%	coding (89/516 nt)	PP_0704	RNA polymerase sigma‑70 factor, ECF subfamily
	?	AE015451	818605 =	61 (1.100)					coding (71/516 nt)	PP_0704	RNA polymerase sigma‑70 factor, ECF subfamily

GCAGGTCCAGCTTAGCGCAGCCGTTCATCGGGCAAACGCCGGTTCTTGCGCAGCTAATCTTTGGCATGCCATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/818825‑818587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCTAAGCTGGACCTGCAATCGACTTGAT  >  AE015451/818605‑818837                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAGGTCCAGCTTAGCGCAGCCGTTCATCGGGCAAACGCCGGTTCTTGCGCAGCTAATCTTTGGCATGCCATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGC                                                                                                                                                                                                                                                >  1:821273/1‑234              AGCGCAGCCGTTCATCGGGCAAACGCCGGTTCTTGCGCAGCTAATCTTTGGCATGCCATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCGGGCAACCA                                                                                                                                                                                                                                   <  1:754648/234‑1                        TTCATCGGGCAAACGCCGGTTCTTGCGCAGCTAATCTTTGGCATGCCATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCC                                                                                                                                                                                                                                            >  1:221884/1‑215                                                                      CATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCA                                                                                                                                                                                                            <  1:1040632/201‑1                                                                                   TATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCA                                                                                                                                                                                                            >  2:1040629/1‑188                                                                                                                                                                                     GAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTC                                                                                                               <  1:1063404/183‑1                                                                                                                                                                                         TCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAG                                                                                                                                                          <  2:1079357/136‑1                                                                                                                                                                                                                                             CCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCTAAGCTGGACCTGCAATCGACTTGAT  >  1:455415/1‑236                                                                                                                                                                                                                                             CCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATCGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCTAAGCTGGACCTGCAATCGACTTGAT  <  1:823600/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAGGTCCAGCTTAGCGCAGCCGTTCATCGGGCAAACGCCGGTTCTTGCGCAGCTAATCTTTGGCATGCCATTGCTCCGCGCTATCTTCCCCGCATAGAATTGAGAACTATTCACAATCGCACACATCACTGGACTGGGCCTTCTCTACGATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATACCTGGTTGCGCGGCTGGTTACGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/818825‑818587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCTAAGCTGGACCTGCAATCGACTTGAT  >  AE015451/818605‑818837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.