New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	818587 =	64 (1.110)	5 (0.090)	5/330	NT	7.5%	coding (89/516 nt)	PP_0704	RNA polymerase sigma‑70 factor, ECF subfamily
	?	AE015451	818605 =	61 (1.100)					coding (71/516 nt)	PP_0704	RNA polymerase sigma‑70 factor, ECF subfamily

ATCGAGGATGACAAGCTTATCCTCTTCGCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCT  >  AE015451/818352‑818812                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  aTCGAGGATGGCAAGCTTATCCTCTTCGCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGAccc                                                                                                                                                                                                                                   <  1:484258/236‑1 (MQ=255)   atcaagtcgattgcaggtccagcttagcgcagccgttcatcgggcaaacgccggttcttgcgcagctaatctttggcatgccattgctccgcgctatcttccccgcatagaattgagaactattcacgatcgcacacatcactggactgggccttctctacgatgcagatcaacgacacgctcaagcccaccgaggtcgctctgctctaccagtctcaccatacctggttgcgCgg                                                                                                                                                                                                                                 <  1:823600‑M1/3‑1 (MQ=255)   atcaagtcgattgcaggtccagcttagcgcagccgttcatcgggcaaacgccggttcttgcgcagctaatctttggcatgccattgctccgcgctatcttccccgcatagaattgagaactattcacaatcgcacacatcactggactgggccttctctacgatgcagatcaacgacacgctcaagcccaccgaggtcgctctgctctaccagtctcaccatacctggttgcgCgg                                                                                                                                                                                                                                 >  1:455415‑M1/234‑236 (MQ=255)        aTGACAAGCTTATCCTCTTCGCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTg                                                                                                                                                                                                                              >  2:514502/1‑234 (MQ=255)                          tCGCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAAcc                                                                                                                                                                                                           <  1:550598/235‑1 (MQ=255)                            gCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGAccc                                                                                                                                                                                                                                   >  2:821270/1‑209 (MQ=255)                             cTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAgg                                                                                                                                                                                                        >  1:902567/1‑235 (MQ=255)                              tGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGtt                                                                                                                                                                                                      >  2:756692/1‑235 (MQ=255)                              tGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTa                                                                                                                                                                                                      >  1:492057/1‑236 (MQ=255)                                        tGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTg                                                                                                                                                                                                                              >  1:119411/1‑202 (MQ=255)                                           gtCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCgcgc                                                                                                                                                                                                               <  1:301935/213‑1 (MQ=255)                                                  aGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTagagca                                                                                                                                                                                   >  1:583531/1‑235 (MQ=255)                                                          cAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCt                                                                                                                                                                          <  1:673832/236‑1 (MQ=255)                                                                     ggTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGt                                                                                                                                                                                                  >  1:63127/1‑201 (MQ=255)                                                                       tAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTg                                                                                                                                                               <  2:670607/234‑1 (MQ=255)                                                                                 ccAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGtt                                                                                                                                                    <  1:389475/235‑1 (MQ=255)                                                                                   aGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGa                                                                                                                                                  >  1:469950/1‑235 (MQ=255)                                                                                    gcgcgcGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCgcgc                                                                                                                                                                                                               <  2:63125/173‑1 (MQ=255)                                                                                         cggcgggggAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGtt                                                                                                                                                    <  2:378752/227‑1 (MQ=255)                                                                                               cggAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTag                                                                                                                                      <  2:492054/235‑1 (MQ=255)                                                                                                   aCTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAg                                                                                                                                 <  1:773732/236‑1 (MQ=255)                                                                                                     tGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGc                                                                                                                               >  1:124959/1‑236 (MQ=255)                                                                                                       gTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGc                                                                                                                               <  1:397949/234‑1 (MQ=255)                                                                                                           atcatcAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAg                                                                                                                                 <  1:334801/228‑1 (MQ=255)                                                                                                            tcatcaAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCgcgc                                                                                                                                                                                                               <  2:513083/149‑1 (MQ=255)                                                                                                              atcaAGCCATGGGCGATGCTGCTGTGGTAGGCGCGCGGTTCTTTGAGCGGCGACAACTGGCGGGCGCGCAATAACCGCACGAAGGTGTCCTGGGCCAGGTCTGCGGCATGTTCACTGCAATCGACCCGGCTGCGACACCAGCCGCGCTACCAGGTATGGTga                                                                                                                                                                                                <  2:567130/162‑1 (MQ=255)                                                                                                               tcaAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTgg                                                                                                                                                                    >  2:753852/1‑189 (MQ=255)                                                                                                                gaattgagaactattcacaatcgcacacatcactggactgggccttctctacgatgcagatcaacgacacgctcaagcccaccgaggtcgctctgctctaccagtctcaccatacctggttgcgCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTc                                                                                                                                                                         <  1:1063404‑M1/59‑1 (MQ=255)                                                                                                                caAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGAcc                                                                                                                                                                           <  2:896310/181‑1 (MQ=255)                                                                                                                caAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCccagtccagt                                                                                                                     <  1:959183/235‑1 (MQ=255)                                                                                                                    ccACGGGCGATGCTGCTGAGGTCGGCGCGCGGTTCTTTGGGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGAtgt                                                                                                                <  1:60538/236‑1 (MQ=255)                                                                                                                       cGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGt                                                                                                                                                                                                  <  2:962846/151‑1 (MQ=255)                                                                                                                       cGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGAtgt                                                                                                                <  2:359498/233‑1 (MQ=255)                                                                                                                                ctgctgAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGa                                                                                                    <  1:642880/236‑1 (MQ=255)                                                                                                                                    tgAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGAt                                                                                                                                                 <  2:441386/187‑1 (MQ=255)                                                                                                                                    ggAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAg                                                                                                                                 <  2:930596/202‑1 (MQ=255)                                                                                                                                     gAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGa                                                                                                    <  2:469947/231‑1 (MQ=255)                                                                                                                                      aGGTAGGCGCGCGGGTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCt                                                                                                                                                                          <  2:392922/160‑1 (MQ=255)                                                                                                                                              gcgcgGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTTGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCGGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTc                                                                                      >  1:720363/1‑236 (MQ=255)                                                                                                                                               cgcgGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGTGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTc                                                                                      <  1:577561/235‑1 (MQ=255)                                                                                                                                                        ttGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCGCGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGAcc                                                                                                                                                                           <  2:79379/141‑1 (MQ=255)                                                                                                                                                           cttctctacgatgcagatcaacgacacgctcaagcccaccgaggtcgctctgctctaccagtctcaccatacctggttgcgCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGa                                                                                                                                                                             <  2:1079357‑M1/55‑1 (MQ=255)                                                                                                                                                             cggcgACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATa                                                                       <  1:496291/236‑1 (MQ=255)                                                                                                                                                                 gACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGGGAAGGCCCAGTCCAGTGAtgtgg                                                                                                              >  2:301253/1‑192 (MQ=255)                                                                                                                                                                 gACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGCTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGGGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGGGGCGTTGATCTGCATCGtg                                                                                                                                       >  2:141986/1‑167 (MQ=255)                                                                                                                                                                   cATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGaa                                                                                                   >  2:1037661/1‑202 (MQ=255)                                                                                                                                                                         gcgggcgCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGc                                                                                                                               <  2:395851/168‑1 (MQ=255)                                                                                                                                                                             gcgcgcAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGTCATGTTCCCTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCa                                                       <  1:1001371/236‑1 (MQ=255)                                                                                                                                                                              cgcgcAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGAtgtgt                                                                                                              <  1:364336/180‑1 (MQ=255)                                                                                                                                                                               gcgcAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCa                                                       >  2:559191/1‑234 (MQ=255)                                                                                                                                                                                          gaaCGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGa                                                                                                    <  2:731801/176‑1 (MQ=255)                                                                                                                                                                                             cGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGc                                                                                                                               <  1:891482/148‑1 (MQ=255)                                                                                                                                                                                                aGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGCAGAGCAGAGCGACCTCGGGGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGGGCg                                                                                                           >  2:260079/1‑165 (MQ=255)                                                                                                                                                                                                         gggCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTagagca                                                                                                                                                                                   <  2:65266/84‑1 (MQ=255)                                                                                                                                                                                                         gggCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTagagca                                                                                                                                                                                   >  1:65268/1‑84 (MQ=255)                                                                                                                                                                                                           gCCAGGTCTGCGGCATGTTCACTGCAACCGGCCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCt                                                                                                                                                                          <  2:591185/91‑1 (MQ=255)                                                                                                                                                                                                             tgctctaccagtctcaccatacctggttgcgCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATa                                                                       >  2:1040629‑M1/32‑188 (MQ=255)                                                                                                                                                                                                             tgctctaccagtctcaccatacctggttgcgCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATg                                                          <  1:1040632‑M1/170‑1 (MQ=255)                                                                                                                                                                                                             cAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCa                                                                                                                                            >  2:810906/1‑119 (MQ=255)                                                                                                                                                                                                             cAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCa                                                                                                                                            <  1:810909/119‑1 (MQ=255)                                                                                                                                                                                                             cAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAg                                                               >  1:140890/1‑196 (MQ=255)                                                                                                                                                                                                             cAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGtt                       >  1:744619/1‑236 (MQ=255)                                                                                                                                                                                                               ggTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATCGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCg                         >  2:823597/1‑232 (MQ=255)                                                                                                                                                                                                                gTCTGCGGCATGTTCAGTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCa                                                       <  1:296509/201‑1 (MQ=255)                                                                                                                                                                                                                gTCTGCGGCATGTTCACTGCAACCGACCTGGCTGCGTAACCAGCCGCGCAACCTGGTATGGTGCGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGGGCGTGTCGTTGATCTGCATCGTAGAGAAGGCccagtccagt                                                                                                                     <  2:10275/139‑1 (MQ=255)                                                                                                                                                                                                                gTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACAAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGttt                      <  1:77666/234‑1 (MQ=255)                                                                                                                                                                                                                  cTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAAgcggcg                         >  1:442890/1‑229 (MQ=255)                                                                                                                                                                                                                       gCATGTTCGCTGCAGCCGACCCGGCGGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCa                                                       <  2:519954/194‑1 (MQ=255)                                                                                                                                                                                                                             tCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACgg         >  2:522805/1‑234 (MQ=255)                                                                                                                                                                                                                             tCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGc        >  1:426307/1‑235 (MQ=255)                                                                                                                                                                                                                                   cAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCt  <  1:522808/235‑1 (MQ=255)                                                                                                                                                                                                                                    tggttgccCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCt  <  1:754648‑M1/226‑1 (MQ=255)                                                                                                                                                                                                                                    aaCCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGAtgtgt                                                                                                              <  1:637718/126‑1 (MQ=255)                                                                                                                                                                                                                                       cGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGAt                                                                                                                  >  2:291913/1‑119 (MQ=255)                                                                                                                                                                                                                                           ccGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACGGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAg                                                               <  2:119409/166‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  ATCGAGGATGACAAGCTTATCCTCTTCGCTGGGCACTTCTGCTTCGGGCAGGTGAGCCAGGCCCTCCTGGTAGGCCCGCTCCAGCGCGCGGCGGCGGAACTGGTCGATCATCAAGCCACGGGCGATGCTGCTGAGGTAGGCGCGCGGTTCTTTGAGCGGCGACATCTGGCGGGCGCGCAACAACCGCACGAAGGTATCCTGGGCCAGGTCTGCGGCATGTTCACTGCAACCGACCCGGCTGCGTAACCAGCCGCGCAACCAGGTATGGTGAGACTGGTAGAGCAGAGCGACCTCGGTGGGCTTGAGCGTGTCGTTGATCTGCATCGTAGAGAAGGCCCAGTCCAGTGATGTGTGCGATTGTGAATAGTTCTCAATTCTATGCGGGGAAGATAGCGCGGAGCAATGGCATGCCAAAGATTAGCTGCGCAAGAACCGGCGTTTGCCCGATGAACGGCTGCGCT  >  AE015451/818352‑818812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.