New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1194168 =	53 (0.920)	3 (0.060)	3/318	NT	5.8%	coding (307/1653 nt)	uxpA	Lipoprotein UxpA
	?	AE015451	1194180 =	49 (0.910)					coding (319/1653 nt)	uxpA	Lipoprotein UxpA

GCCTGGCGATACAGGCCCGTGCTGCGTTGTGGCCACAGCACACGCTCGTCGCTGCTGACCCGCGCTTCGATGCCCAGCAGCTGGCTGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1194406‑1194168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCA  >  AE015451/1194180‑1194384                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCTGGCGATACAGGCCCGTGCTGCGTTGTGGCCACAGCACACGCTCGTCGCTGCTGACCCGCGCTTCGATGCCCAGCAGCTGGCTGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCT                                                                                                                                                                                                                   <  1:449706/235‑1                   GTGCTGCGTTGTGGCCACAGCACACGCTCGTCGCTGCTGACCCGCGCTTCGATGCCCAGCAGCTGGCTGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCC                                                                                                                                                                                                                       >  2:628851/1‑213                                              TCGTCGCTGCTGACCCGCGCTTCGATGCCCAGCAGCTGGCTGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCTGGGCGGT                                                                                                                                                                                                            <  1:147756/197‑1                                                                                      TGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCTGGGCGGTTATGCGGTACTCGCG                                                                                                                                                                                             <  2:626194/172‑1                                                                                                                                                   ggCGTTTTCCAGGGTCAGGCTGCTGCCCGCACCGGCCTCGCCACGCAGTGGTTCCAGCAGCGCCGCGAGTACCGCATAACCGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGG                                                                                                                                                                 <  2:794316/137‑1                                                                                                                                                                  agacagGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGA                                                                                            <  1:794319/187‑1                                                                                                                                                                                                                                    GCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCA  <  1:269239/217‑1                                                                                                                                                                                                                                          CTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCG                                        <  1:937678/173‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCTGGCGATACAGGCCCGTGCTGCGTTGTGGCCACAGCACACGCTCGTCGCTGCTGACCCGCGCTTCGATGCCCAGCAGCTGGCTGCCTTGCACACCACTTTCGCCCTGGGTCAGGTAGGCCAGGCCACTGCCATTCCAGCCCTGGCCGTTTTCCAGGGTCAGGCTGTTGCCCGCACCGGCCTCGCCACGCAGTTGTTCCAGCAACGCCGCGAGTACCGCATAACCGCCCAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1194406‑1194168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCA  >  AE015451/1194180‑1194384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.