New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1194168 =	53 (0.920)	3 (0.060)	3/318	NT	5.8%	coding (307/1653 nt)	uxpA	Lipoprotein UxpA
	?	AE015451	1194180 =	49 (0.910)					coding (319/1653 nt)	uxpA	Lipoprotein UxpA

GCAGCAGGGCGGCAATGCCCAGCTCGACTTGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCAGCACGGGCCTGTATCGCCAGGC  >  AE015451/1193966‑1194406                                                                                                                                                                                                                       |                                                                                                                                                                                                                                   gcagcaGGGCGGCAATGCCCAGCTCGACTTGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGt                                                                                                                                                                                                               <  1:605897/236‑1 (MQ=255)        ggcggcAATGCCCAGCTCGACTTGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCg                                                                                                                                                                                                                            >  2:826991/1‑216 (MQ=255)        ggcggcAATGCCCAGCTCGACTTGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTgg                                                                                                                                                                                                         >  1:1001938/1‑235 (MQ=255)                     tcgtcgctgctgacccgcgcttcgatgcccagcagctggctgccttgcacaccactttcgccctgggtcaggtaggccaggccactgccattccagccctggccgttttccagggtcaggctgttgcccgcaccggcctcgccacgcagttgttccagcaacgccgcgagtaccgcataaccgcccagctgggcGGt                                                                                                                                                                                                                                  <  1:147756‑M2/3‑1 (MQ=255)                             ttGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGa                                                                                                                                                                                         <  1:787532/230‑1 (MQ=255)                                cTGTACGTCGCCGATCCCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTgg                                                                                                                                                                                                         <  1:239751/211‑1 (MQ=255)                                     cGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGt                                                                                                                                                                                                               <  2:666913/200‑1 (MQ=255)                                           cGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTcgc                                                                                                                                                                                                                    <  2:596021/189‑1 (MQ=255)                                           cGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGc                                                                                                                                                                      >  1:628854/1‑235 (MQ=255)                                                      aTGCCGGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCggg                                                                                                                                                                             <  2:772157/217‑1 (MQ=255)                                                             tgccttgcacaccactttcgccctgggtcaggtaggccaggccactgccattccagccctggccgttttccagggtcaggctgttgcccgcaccggcctcgccacgcagttgttccagcaacgccgcgagtaccgcataaccgcccagctgggcGGTTATGCGGTACTcgcg                                                                                                                                                                                                                   <  2:626194‑M2/18‑1 (MQ=255)                                                                    ggCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGaa                                                                                                                                                                                                       >  2:799694/1‑177 (MQ=255)                                                                     gCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTg                                                                                                                                            <  1:834477/235‑1 (MQ=255)                                                                                gtACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGa                                                                                                                                                                                         <  1:799697/179‑1 (MQ=255)                                                                                   ccGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGa                                                                                                                                                                                         <  2:843171/176‑1 (MQ=255)                                                                                   ccGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCGGGAAAACgg                                                                                                                                                     >  2:604772/1‑212 (MQ=255)                                                                                   ccGGCTACCCGGTTGGGGCCGGTCAGCAACGTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGTCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACCGCCCAGCTGGGCTGtcgt                                                                                                                                                                                                                               <  2:839261/138‑4 (MQ=255)                                                                                    cGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGtggcct                                                                                                                             <  1:448103/235‑1 (MQ=255)                                                                                       cTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGtggcctggc                                                                                                                          >  1:514905/1‑235 (MQ=255)                                                                                        tcaggtaggccaggccactgccattccagccctggccgttttccagggtcaggctgttgcccgcaccggcctcgccacgcagttgttccagcaacgccgcgagtaccgcataaccGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCgggcaacctgtct                                                                                                                                                                   <  1:794319‑M1/78‑7 (MQ=255)                                                                                           ccGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTa                                                                                                                       >  2:699763/1‑234 (MQ=255)                                                                                             ggTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGCATGGCAggg                                                                                                                                 >  2:931626/1‑220 (MQ=255)                                                                                                       ggTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGACAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGc                                                                                                          >  1:597430/1‑235 (MQ=255)                                                                                                            gCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGa                                                                                                                  <  1:584777/222‑1 (MQ=255)                                                                                                                 ttGGGCCGTGCGCCCTGGATGCCCGGCCGCAGCGCCAGTATCGCCTCCCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACa                                                                                                                                                                        <  2:210350/163‑1 (MQ=255)                                                                                                                  tGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGgtgt                                                                                               <  1:531438/235‑1 (MQ=255)                                                                                                                          ggcgttttccagggtcaggctgctgcccgcaccggcctcgccacgcagtggttccagcagcgccgcgagtaccgcataaccgcccagctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAgg                                                                                                                                                                                       <  2:794316‑M2/46‑1 (MQ=255)                                                                                                                            gcCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGGGTGCAAGGcagc                                                                                     >  1:871615/1‑235 (MQ=255)                                                                                                                                         agacaggttgcccgcaccggcctcgccacgcagttgttccagcaacgccgcgagtaccgcataaccgcccagctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGa                                                                                                                  <  1:794319‑M2/115‑1 (MQ=255)                                                                                                                                           ccGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCACCAGCCTGACCCTGGAAAACGGCCAGGGCTg                                                                                                                                            >  2:15569/1‑165 (MQ=255)                                                                                                                                           ccGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATc                                                                      >  1:58215/1‑235 (MQ=255)                                                                                                                                             gCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTa                                                                                                                       >  2:689034/1‑184 (MQ=255)                                                                                                                                                        aTCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGtggcctgg                                                                                                                           >  2:680886/1‑169 (MQ=255)                                                                                                                                                            ccTGCCCGCACCGGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGca                                                                                       <  2:863357/201‑1 (MQ=255)                                                                                                                                                             cctcgccacgcagttgttccagcaacgccgcgagtaccgcataaccGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGCTGCTGGAACCACTGCGTGGCGAGGCCGGTGCGGGCAGCAGCCTGACCCTGGAAAacgcc                                                                                                                                                    <  2:794316‑M1/93‑3 (MQ=255)                                                                                                                                                              tACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACg                                                                                                                                                      >  2:582444/1‑136 (MQ=255)                                                                                                                                                              tACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACg                                                                                                                                                      <  1:582447/136‑1 (MQ=255)                                                                                                                                                               aCCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGcgcg                                                              >  2:742306/1‑223 (MQ=255)                                                                                                                                                                  cGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAg                                              <  1:826994/236‑1 (MQ=255)                                                                                                                                                                   gCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCCGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGc                                                                                                          >  1:509639/1‑175 (MQ=255)                                                                                                                                                                    cAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCgcgg                                                                                                                                                                                                                  >  2:639241/1‑70 (MQ=255)                                                                                                                                                                    cAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGc                                             >  1:662331/1‑235 (MQ=255)                                                                                                                                                                     aaCTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTcagcag                                                     <  2:613476/226‑1 (MQ=255)                                                                                                                                                                     aaCTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCg                                            <  1:737903/235‑1 (MQ=255)                                                                                                                                                                           cgccgcTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTg                                                                                                                   <  1:197916/158‑1 (MQ=255)                                                                                                                                                                             ccgcTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAgct                                                                                <  2:381002/191‑1 (MQ=255)                                                                                                                                                                             ccgcTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAgct                                                                                >  1:381005/1‑191 (MQ=255)                                                                                                                                                                             ccgcTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGGCAGCAGCGACGAGCGTGTGCtg                                     >  2:937670/1‑234 (MQ=255)                                                                                                                                                                                   ctCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAgg                                                                                                                                                <  2:30612/121‑1 (MQ=255)                                                                                                                                                                                   ctCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCcaca                             <  1:786488/236‑1 (MQ=255)                                                                                                                                                                                       aTGCCCGCCAGGCAACGACAGCACAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAgg                                                                                                                                                                                       <  2:192207/78‑1 (MQ=255)                                                                                                                                                                                        tGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACgca                        <  1:699766/236‑1 (MQ=255)                                                                                                                                                                                        agCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACgca                        <  2:644451/235‑1 (MQ=255)                                                                                                                                                                                         cgcgagtaccgcataaccGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGca                                                                                       <  2:626194‑M1/154‑1 (MQ=255)                                                                                                                                                                                          cccGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGt                                                                                                                                  <  2:138096/128‑1 (MQ=255)                                                                                                                                                                                          cccGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGt                                                                                                                                  <  2:824167/128‑1 (MQ=255)                                                                                                                                                                                          cccGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGa                                                                                                                  <  2:728523/144‑1 (MQ=255)                                                                                                                                                                                                        accGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGcgacga                                               <  1:147756‑M1/194‑1 (MQ=255)                                                                                                                                                                                                           gcccagctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACgca                        <  1:269239‑M2/205‑1 (MQ=255)                                                                                                                                                                                                               AGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCAGCACGGGCCTGTATCgccaggc  <  1:449706‑M1/235‑1 (MQ=255)                                                                                                                                                                                                                 ctgggcGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGcgcg                                                              <  1:937678‑M2/167‑1 (MQ=255)                                                                                                                                                                                                                   GGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCAGCAc                    >  2:628851‑M1/1‑213 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                                   GCAGCAGGGCGGCAATGCCCAGCTCGACTTGCTGTACGTCGCCGATACCCTCGATGCCCGCCAGCCTGGCCAGGCGGTGGTACCGGCTACCCGGTTGGGGCCGGTCAGCCACTTGGGCCGTGCGCCCTGGATGACCGGCCGCAGCGCCAGTATCGCCTACCCGCAACTGGCGCCGCTGCTCGATGCCCGCCAGGCAACGACAGCCCAGCTGGGCGGTTATGCGGTACTCGCGGCGTTGCTGGAACAACTGCGTGGCGAGGCCGGTGCGGGCAACAGCCTGACCCTGGAAAACGGCCAGGGCTGGAATGGCAGTGGCCTGGCCTACCTGACCCAGGGCGAAAGTGGTGTGCAAGGCAGCCAGCTGCTGGGCATCGAAGCGCGGGTCAGCAGCGACGAGCGTGTGCTGTGGCCACAACGCAGCACGGGCCTGTATCGCCAGGC  >  AE015451/1193966‑1194406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.