New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 194711159 (1.020)4 (0.070) 4/324 NT 6.6% coding (629/1185 nt) PP_1748 conserved protein of unknown function
?AE015451 = 1947134 57 (1.040)coding (606/1185 nt) PP_1748 conserved protein of unknown function

AGTCATGGTCGCCGGCCAGTTTCAGCAGGTGCCGGGACAGGTGGTAGTCGTAAGGCCCCGACGAGTCCTGCATGGCCACACTGACCGCATGCTCGCTGGAAGCCTGCCCGGGCGCCACCGGGGCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1946875‑1947111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcggcACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGCGCCCTGCCCTGGGACGTCAGCGAGTTCGTCGGCATCGACATCGCCCCGGTGGCGCCCGGGCAGGCTTCCAGCGAGCATGCGGTCAGTG  <  AE015451/1947134‑1946953
                                                                                                                                                                                                                                                                                                                                                                                                                                   
AGTCATGGTCGCCGGCCAGTTTCAGCAGGTGCCGGGACAGGTGGTAGTCGTAAGGCCCCGACGAGTCCTGCATGGCCACACTGACCGCATGCTCGCTGGAAGCCTGCCCGGGCGCCACCGGGGCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGG                                                                                                                                                                                         <  1:471553/236‑1
                         CAGGTGCCGGGACAGGTGGTAGTCGTAAGGCCCCGACGAGTCCTGCATGGCCACACTGACCGCATGCTCGCTGGAAGCCTGCCCGGGCGCCACCGGGGCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGC                                                                                                                                                                                           <  2:809314/209‑1
                                                                                                             GGGCGCCACCGGGGCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGC                                                                                                                                                                                               >  2:13773/1‑121
                                                                                                                                                                                                           AACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCACTGAAGGCTGTGGTGGAAA                                                                                                                                                                    >  1:285962/1‑54
                                                                                                                                                                                                           AACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCACTGAAGGCTGTGGTGGAAA                                                                                                                                                                    <  2:285959/54‑1
                                                                                                                                                                                                                CGGGTGGCAGTCGATCAGCGGCTGGCGGCACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGC                                                                                          <  1:635867/123‑1
                                                                                                                                                                                                                CGGGTGGCAGTCGATCAGCGGCTGGCGGCACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGC                                                                                          >  2:635864/1‑123
                                                                                                                                                                                                                                     CTGGCGGCACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGCGCCCTGCCCTGGGACGTCAGCGAGTGCGTCGGCATCGACATCGCCCCGGTGGCGCCCGGGCAGGCTTCCAGCGAGCATGC          <  2:300530/182‑1
                                                                                                                                                                                                                                      TGGCGGCACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGCGCCCTGCCCTGGGACGTCAGCGAGTTCGGCGGCATCGACATCGCCCCGGTGGCGCCCGGGCAGGCTTCCAGCGgg               >  1:344969/1‑174
                                                                                                                                                                                                                                            CACTGAAGGCTGTGGTGGAAAGCGGCCGCCCGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGCGCCCTGCCCTGGGACGTCAGCGAGTTCGTCGGCATCGACATCGCCCCGGTGGCGCCCGGGCAGGCTTCCAGCGAGCATGCGGTCAGTG  <  1:339514/183‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                   
AGTCATGGTCGCCGGCCAGTTTCAGCAGGTGCCGGGACAGGTGGTAGTCGTAAGGCCCCGACGAGTCCTGCATGGCCACACTGACCGCATGCTCGCTGGAAGCCTGCCCGGGCGCCACCGGGGCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1946875‑1947111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcggcACTGAAGGCTGTGGTGGAAAGCGGCCGCCAGCCGCTGATCGACTGCCACCCGCTGTTCACCATCACCGAGGAGACCGGCTCGGGTGCAGCCGGCGCCCTGCCCTGGGACGTCAGCGAGTTCGTCGGCATCGACATCGCCCCGGTGGCGCCCGGGCAGGCTTCCAGCGAGCATGCGGTCAGTG  <  AE015451/1947134‑1946953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.