New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2262655 =	50 (0.870)	3 (0.050)	3/330	NT	5.9%	coding (370/861 nt)	truA	tRNA pseudouridine (38‑40)synthase
	?	AE015451	2262708 =	48 (0.860)					coding (423/861 nt)	truA	tRNA pseudouridine (38‑40)synthase

CCAGCACGATCATCTGGCCATGGCGGGTAACACGCAGGTGGTAGATGTGCTTGATCGGTGACTTGGCCTGACACTGGCTGGCACGGAAGGCGCTGAAGTCGTGGGTACCGAGCAGGTACTGCGCCGCCTCGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2262892‑2262655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaCCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGT  >  AE015451/2262708‑2262749                                                                                                                                                                                                                                                                                          CCAGCACGATCATCTGGCCATGGCGGGTAACACGCAGGTGGTAGATGTGCTTGATCGGTGACTTGGCCTGACACTGGCTGGCACGGAAGGCGCTGAAGTCGTGGGTACCGAGCAGGTACTGCGCCGCCTCGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGC                                               <  1:873018/235‑1                                                                               TGGCACGGAAGGCGCTGAAGTCGTGGGTACCGAGCAGGTACTGCGCCGCCTCGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCACCTGGCCGAA                                  <  1:1046225/170‑1                                                                                                                 CAGGTACTGCGCCGCCTCGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGT  <  2:818171/168‑1                                                                                                                                  CGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCA                                            <  1:849051/109‑1                                                                                                                                  CGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCA                                            >  2:849048/1‑109                                                                                                                                                      gGCGGACGGTGGTTCCAGGGCACTTCTTCGGCCAGGTGCGCCGGGCGACTCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACG   <  2:308072/129‑1                                                                                                                                                                                                                                     GCCGGGCGCACCTGGCCGAAGACGTGACCTGGAACCACCGTCCGCTGG      <  2:200609/48‑1                                                                                                                                                                                                                                                                                          CCAGCACGATCATCTGGCCATGGCGGGTAACACGCAGGTGGTAGATGTGCTTGATCGGTGACTTGGCCTGACACTGGCTGGCACGGAAGGCGCTGAAGTCGTGGGTACCGAGCAGGTACTGCGCCGCCTCGGCCATGCGATCGACGTCCAGCGGACGGTGGTTCCAGGTCACTTCTTCGGCCAGGTGCGCCGGGCGAATCGGGTCGTTGTAGATGACATAGCGGTAACGCCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2262892‑2262655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaCCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGT  >  AE015451/2262708‑2262749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.