New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2262655 =	50 (0.870)	3 (0.050)	3/330	NT	5.9%	coding (370/861 nt)	truA	tRNA pseudouridine (38‑40)synthase
	?	AE015451	2262708 =	48 (0.860)					coding (423/861 nt)	truA	tRNA pseudouridine (38‑40)synthase

CGCCGGGCGTACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCACCGCCTTCCTGCACC  >  AE015451/2262480‑2262919                                                                                                                                                                                                                                     |                                                                                                                                                                                                                    cgcCGGGCGTACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACAGCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCCCCCGGCGCACCTGGcc                                                                                                                                                                                                               >  1:213175/1‑235 (MQ=255)    cGGGCGTACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCg                                                                                                                                                                                                              >  1:89576/1‑233 (MQ=255)      ggCGTACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCgaag                                                                                                                                                                                                           <  2:721190/234‑1 (MQ=255)          tACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTg                                                                                                                                                                                                      <  1:642589/235‑1 (MQ=255)                   cGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAacc                                                                                                                                                                                            <  1:1079791/236‑1 (MQ=255)                                       aGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGAt                                                                                                                                                                        >  1:388326/1‑236 (MQ=255)                                                aCTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTcc                                                                                                                                                                                     >  1:111580/1‑214 (MQ=255)                                                      aTACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAggcg                                                                                                                                                         >  1:864252/1‑236 (MQ=255)                                                        aCCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCgaaga                                                                                                                                                                                                          <  2:615764/185‑1 (MQ=255)                                                        aCCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAggcgg                                                                                                                                                        <  1:999268/235‑1 (MQ=255)                                                               ccgtgcGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGAc                                                                                                                                                                              >  2:85668/1‑206 (MQ=255)                                                                     tggcacggaaggcgctgaagtcgtgggtaccgagcaggtactgcgccgcctcggccatgcgatcgacgtccagcggacggtggttccaggtcacttcttcggccaggtgcgccgggcgaatcgggtcgttgtagatgacatagcggtaacgccgggcgcaCCTGGCCgaa                                                                                                                                                                                                            <  1:1046225‑M2/10‑1 (MQ=255)                                                                        aCGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGt                                                                                                                                       <  1:1079581/236‑1 (MQ=255)                                                                               cgcCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCAc                                                                                                                                 >  1:557402/1‑235 (MQ=255)                                                                                             gCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCgacg                                                                                                                                                                                                           >  2:195165/1‑145 (MQ=255)                                                                                              cACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCg                                                                                                                                                              <  2:987429/191‑1 (MQ=255)                                                                                                    cTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTgcc                                                                                                            <  1:739629/235‑1 (MQ=255)                                                                                                       caggtactgcgccgcctcggccatgcgatcgacgtccagcggacggtggttccaggtcacttcttcggccaggtgcgccgggcgaatcgggtcgttgtagatgacatagcggtaacgccgggcgcaCCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGt                                                                                                                                                                            <  2:818171‑M2/42‑1 (MQ=255)                                                                                                        aaCCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAg                                                                                                                                                   <  2:478226/192‑1 (MQ=255)                                                                                                                 cACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGc                                                                                              >  1:458294/1‑236 (MQ=255)                                                                                                                         cAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAg                                                                                                                         >  2:92521/1‑201 (MQ=255)                                                                                                                                gtctggtcGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCaa                                                                               <  1:85670/236‑1 (MQ=255)                                                                                                                                   tggtcGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGca                                                                            >  1:1057947/1‑236 (MQ=255)                                                                                                                                   tggtcGCGGCCAATGCCGGCCGACTTGCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGAt                                                                                                                                                                        >  2:765880/1‑144 (MQ=255)                                                                                                                                     gtcGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGcac                                                                           <  1:544033/235‑1 (MQ=255)                                                                                                                                      acgtccagcggacggtggttccaggtcacttcttcggccaggTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTg                                                                                                                                             <  2:818171‑M1/126‑1 (MQ=255)                                                                                                                                       cgtccagcggacggtggttccaggtcacttcttcggccaggTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGAGTCGCCCGGCGCACCTGGCCGAAGAAGTGCCCTGGAACCACCGTCCgcc                                                                                                                                                                                  <  2:308072‑M1/89‑2 (MQ=255)                                                                                                                                        gcgGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCa                                                                                                                          <  1:40317/185‑1 (MQ=255)                                                                                                                                            ggtgcgccggccgACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAg                                                                                                >  1:968847/6‑207 (MQ=255)                                                                                                                                            ggcggacggtggttccagggcacttcttcggccaggtgcgccgggcgactcgggtcgttgtagatgacatagcggtaacgccgggcgcaCCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACg                                                                                                                                                                             <  2:308072‑M2/41‑1 (MQ=255)                                                                                                                                             cAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAg                                                                                                                                                   >  1:908334/1‑155 (MQ=255)                                                                                                                                             cAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAg                                                                                                                                                   <  2:908331/155‑1 (MQ=255)                                                                                                                                                    ggccgACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTgcca                                                                                                           <  2:388323/188‑1 (MQ=255)                                                                                                                                                              cATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCa                                                 >  1:520744/1‑236 (MQ=255)                                                                                                                                                                      ttcggccaggTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTgcca                                                                                                           <  1:1046225‑M1/160‑1 (MQ=255)                                                                                                                                                                       ttCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAgat                                        >  1:435230/1‑236 (MQ=255)                                                                                                                                                                          aaGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAgat                                        <  2:843188/233‑1 (MQ=255)                                                                                                                                                                                TGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCg                                                                                                                                                              <  1:849051‑M1/109‑1 (MQ=255)                                                                                                                                                                                TGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCg                                                                                                                                                              >  2:849048‑M1/1‑109 (MQ=255)                                                                                                                                                                                   GCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTgg                             <  1:873018‑M1/235‑1 (MQ=255)                                                                                                                                                                                          gTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGc                                                                                                                                                                                   <  2:838087/78‑1 (MQ=255)                                                                                                                                                                                          gTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGccagccagc                                                                                                     >  1:100271/1‑155 (MQ=255)                                                                                                                                                                                          gTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAgatgc                                      >  1:223424/1‑218 (MQ=255)                                                                                                                                                                                            tACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACgtgcgtgc                   >  1:912118/1‑236 (MQ=255)                                                                                                                                                                                             aCCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCaa                                                                               <  1:809864/175‑1 (MQ=255)                                                                                                                                                                                               cGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 <  1:627440/235‑1 (MQ=255)                                                                                                                                                                                               cGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 <  1:458670/235‑1 (MQ=255)                                                                                                                                                                                                        gtCTACAACGACCCGAGTCGCCCGGCGCACCTGGCCGAAGACGTGACCTGGAGCCACCGGCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTacca                                                                   <  2:63721/175‑1 (MQ=255)                                                                                                                                                                                                         tCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAgat                                        <  1:1057941/202‑1 (MQ=255)                                                                                                                                                                                                             cAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATc                                                                                 <  1:105370/157‑1 (MQ=255)                                                                                                                                                                                                              aaCGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCGCCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCACCGCCTTCCTGcacc  <  1:951522/235‑1 (MQ=255)                                                                                                                                                                                                                cGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGcc                                            <  1:369097/191‑1 (MQ=255)                                                                                                                                                                                                                     cGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCACCg              >  1:1047875/1‑216 (MQ=255)                                                                                                                                                                                                                      gATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 <  1:990638/212‑1 (MQ=255)                                                                                                                                                                                                                      gATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 >  2:990635/1‑212 (MQ=255)                                                                                                                                                                                                                      gATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 >  1:636715/1‑212 (MQ=255)                                                                                                                                                                                                                      gATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCa                 <  2:636712/212‑1 (MQ=255)                                                                                                                                                                                                                           gccgggcgcaCCTGGCCGAAGACGTGACCTGGAACCACCGTCCGCTgg                                                                                                                                                                                <  2:200609‑M2/38‑1 (MQ=255)                                                                                                                                                                                                                                     ccTGGCCGAAGAAGTGACCTGGAACCACCGGCCGCTGGACGTCGACCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACACACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATc                                                                                 <  2:999508/133‑1 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                    CGCCGGGCGTACCGACGCCGGCGTTCACGGCTGCGGGCAGGTCGTGCACTTCGATACCCGTGCCGTGCGTGACGAGCGCGCCTGGACCATGGGCACCAACTTCAACCTGCCGCACGACATCAGCGTGGTCTGGTCGCGGCCAATGCCGGCCGACTTTCATGCCCGCTTCAAGGCCTGCGCCCGGCGTTACCGCTATGTCATCTACAACGACCCGATTCGCCCGGCGCACCTGGCCGAAGAAGTGACCTGGAACCACCGTCCGCTGGACGTCGATCGCATGGCCGAGGCGGCGCAGTACCTGCTCGGTACCCACGACTTCAGCGCCTTCCGTGCCAGCCAGTGTCAGGCCAAGTCACCGATCAAGCACATCTACCACCTGCGTGTTACCCGCCATGGCCAGATGATCGTGCTGGACGTGCGTGCCACCGCCTTCCTGCACC  >  AE015451/2262480‑2262919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.