New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2357939	53 (0.920)	3 (0.050)	3/324	NT	5.1%	coding (372/825 nt)	PP_2072	Transcriptional regulator, AraC family
	?	AE015451	= 2357967	61 (1.120)					coding (344/825 nt)	PP_2072	Transcriptional regulator, AraC family

GTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2357696‑2357939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgctggcgGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACA  <  AE015451/2357967‑2357750                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCATTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTT                                                                                                                                                                                                                                    <  1:1018995/236‑1      GCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTG                                                                                                                                                                                                                               <  1:249242/236‑1       CGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTGCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTG                                                                                                                                                                                                                               <  1:159961/235‑1                                                           ATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCATGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGC                                                                                                                                                                                                                                 <  2:451561/181‑1                                                             GCCCGCATGCAGGTGTGCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCGGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTG                                                                                                                                                                                                                               <  2:212631/181‑1                                                               CCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCT                                                                                                                                                                                                                                >  2:331990/1‑178                                                                                                                                                                                          CCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATG                                                                                                                         >  1:71535/1‑158                                                                                                                                                                                          CCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTG                                                                                                                                                                                                                               <  1:972306/56‑1                                                                                                                                                                                          CCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTG                                                                                                                                                                                                                               >  2:972303/1‑56                                                                                                                                                                                              TTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAGCGCTTCGCTGGCGGGCGGTCCAGCGACCCGCGTCTGTACGACGCCAGCGACGCGGTCGTAC                                                                                                                                                                            >  2:477866/1‑103                                                                                                                                                                                                      ATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTT                                                                                                                                                                                                                                    >  1:363163/1‑39                                                                                                                                                                                                      ATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTT                                                                                                                                                                                                                                    <  2:363160/39‑1                                                                                                                                                                                                                                    CGAACGCTTCGCTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACA  >  1:923132/1‑235                                                                                                                                                                                                                                           TTCGCTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGAACACGC                                                                                                                                                            >  2:484981/1‑74                                                                                                                                                                                                                                            TCGCTGGCGGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCT                                  >  2:380765/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2357696‑2357939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgctggcgGGCTGTCCAGCGACCCGCGTCTGTACCACGCCAGCGAAGCGTTCGTACAGGCAGTGGACCACGCGCTGGAACCATTGGAAGAACAGGACGCCCTGTATGACCTGGCGATCGCCTTGCGGGCCGTCGGCGGCAAGCCGCGCGGGCGCAAGCGCCTGGATTACCAGGCAGCCGAACGCGCCCGAGCCTTCATCATGGAACACCTGCATGTGGGCATAACA  <  AE015451/2357967‑2357750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.