New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2388103	27 (0.470)	3 (0.050)	3/326	NT	10.2%	coding (863/1023 nt)	pyrD	Dihydroorotate dehydrogenase (quinone)
	?	AE015451	= 2388114	27 (0.490)					coding (874/1023 nt)	pyrD	Dihydroorotate dehydrogenase (quinone)

ACGAAGAAACGGCGCTGGTGGCCGCTGCGCTGATGGAGTCGGGCATGGATGCGGTGATCGCCACCAACACCACGCTGGGCCGTGAAGGTGTCGAAGCATTGCCGTACGGTGGCGAGGCGGGCGGCCTGTCGGGCGCACCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2387908‑2388103 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaTGATCGGCAACTTGCCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGGTGCTCTTCTCCAGCACCGGTGCGCCCGACAGGCCGCCCGCCTCGCCACCGTACGGCAATGCTTCGACACCTTCACGGCCCAGCGTGGTGTTGGTG  <  AE015451/2388114‑2387969                                                                                                                                                                                                                                                                                                                                                        ACGAAGAAACGGCGCTGGTGGCCGCTGCGCTGATGGAGTCGGGCATGGATGCGGTGATCGCCACCAACACCACGCTGGGCCGTGAAGGTGTCGAAGCATTGCCGTACGGTGGCGAGGCGGGCGGCCTGTCGGGCGCACCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAA                                                                                                                                                    <  2:314172/196‑1                               TGATGGAGTCGGGCATGGATGCGGTGATCGCCACCAACACCACGCTGGGCCGTGAAGGTGTCGAAGCATTGCCGTACGGTGGCGAGGCGGGCGGCCTGTCGGGCGCACCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCG                                                                                                                                                        >  1:865852/1‑162                               TGATGGAGTCGGGCATGGATGCGGTGATCGCCACCAACACCACGCTGGGCCGTGAAGGTGTCGAAGCATTGCCGTACGGTGGCGAGGCGGGCGGCCTGTCGGGCGCACCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCG                                                                                                                                                        <  2:865849/162‑1                                                                                                                                          CCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAATGATCGGCAACTTGCCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGGTGCTCTTCTCCAGCACCGGTGCGCCCGACAGGCCGCCCGCCTCGCCACCGTACGGCAATGCTTCGACACCTTCACGGCCCAGCGTGGTGTTGGTG  >  1:567106/1‑205                                                                                                                                                CTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAATGATCGGCAACTTGCCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGGTGCTCTTCTCCAGCACCGGTGCGCCCGACAGGCC                                                               <  1:698973/138‑1                                                                                                                                                CTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAATGATCGGCAACTTGCCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGGTGCTCTTCTCCAGCACCGGTGCGCCCGACAGGCC                                                               >  2:698970/1‑138                                                                                                                                                                                              GCGGCAATGAACGGCAACTTGTCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGCTGGGCTTCACCAGCACCGGTGCGCCAGACCGGCCac                                                             >  2:918980/1‑92                                                                                                                                                                                                                                                                                                                                                        ACGAAGAAACGGCGCTGGTGGCCGCTGCGCTGATGGAGTCGGGCATGGATGCGGTGATCGCCACCAACACCACGCTGGGCCGTGAAGGTGTCGAAGCATTGCCGTACGGTGGCGAGGCGGGCGGCCTGTCGGGCGCACCGGTGCTGGAGAAGAGCACCCATATCGTCAAGGTGCTGGCAGGTGAGCTGGGCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2387908‑2388103 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaTGATCGGCAACTTGCCGCCCAGCTCACCTGCCAGCACCTTGACGATATGGGTGCTCTTCTCCAGCACCGGTGCGCCCGACAGGCCGCCCGCCTCGCCACCGTACGGCAATGCTTCGACACCTTCACGGCCCAGCGTGGTGTTGGTG  <  AE015451/2388114‑2387969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.