New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 279228741 (0.710)3 (0.050) 3/326 NT 6.4% coding (252/894 nt) PP_2444 Transcriptional regulator, LysR family
?AE015451 = 2792374 48 (0.870)coding (165/894 nt) PP_2444 Transcriptional regulator, LysR family

TAGCCAGGTCTGCCAGTAACCGCTCAAGTTTGTCCTCGCGGCAGTTGATGCGCAGCACCTCCTCCAGGTCCATGGTCGGTGCCAGCAGGCGGTAGACAATGGATTTGGGCACCACGTCAGCCACCCCCACACGGAACAGGATCTGCTCTTGAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2792127‑2792287
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaGCTGGAACTGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTTTCAGATCGGCAGCGAGCTTGAAGCCATGCTGCGTGCCGGCCCTCAAGAGCAGATCCTGTTCCGTGTGGGGGTGGCTGACGTGGTGCCCAAATCCATTGTCTACCGCCTGCTGGCACCGACCATGGACCTGGAGGAGGTGCTGCGCATCAACTGCCGCGAGGACAAACT  <  AE015451/2792374‑2792153
                                                                                                                                                                                                                                                                                                                                                                                               
TAGCCAGGTCTGCCAGTAACCGCTCAAGTTTGTCCTCGCGGCAGTTGATGCGCAGCACCTCCTCCAGGTCCATGGTCGGTGCCAGCAGGCGGTAGACAATGGATTTGGGCACCACGTCAGCCACCCCCACACGGAACAGGATCTGCTCTTGAGGGC                                                                                                                                                                                                                                     >  1:877307/1‑156
                                                                                       GGCGGTAGACAATGGATTTGGGCACCACGTCAGCCACCCCCACACGGAACAGGATCTGCTCTTGAGGGGCGGC                                                                                                                                                                                                                                 <  2:192062/73‑1
                                                                                                                CACGTCAGCCACCCCCACACGGAACAGGATCTGCTCTTGAGGGCCGGCAGCTGGAACTGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTTTCAGATCGGCAGCGAGCTTGAAGCCA                                                                                                                                                >  1:667334/1‑129
                                                                                                                               CACACGGAACAGGATCTGCTCTTGAGGGCCGGCAGCTGGAACTGACAGAAAC                                                                                                                                                                                                              >  1:394669/1‑52
                                                                                                                                                   CTTGAGGGCCGGCAGCTGGAACTGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTTTCAGATCGGCAGCGAGCTTGAAGCCATGCTGCGTGCCGGCCCTCAAGAGCAGATCCTGTTCCGTGTGGGGGTGGCTGACGTGGTGCCCAAATCCATTGTCTACCGCCTGCTGGCACCCACCATGGACCTGGAGGAGGTGCTGCGCATCAACTGCCGCGAGGACAAACT  >  1:665006/1‑236
                                                                                                                                                          GCCGGCAGCTGGAACTGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTTTCAGATCGGCAGCGAGCTTGAAGCCATGCTGCGCGCCGGCCCTCA                                                                                                                             >  2:130527/1‑106
                                                                                                                                                              GCAGCTGGAACCGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTCTCAGATCGGCAGCGAGCTTGAAGCCATGCTGCGTGCCGGCCCTCAAG                                                                                                                           <  2:673458/104‑1
                                                                                                                                                                                                                                                                                                                                                                                               
TAGCCAGGTCTGCCAGTAACCGCTCAAGTTTGTCCTCGCGGCAGTTGATGCGCAGCACCTCCTCCAGGTCCATGGTCGGTGCCAGCAGGCGGTAGACAATGGATTTGGGCACCACGTCAGCCACCCCCACACGGAACAGGATCTGCTCTTGAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2792127‑2792287
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaGCTGGAACTGACAGAAACCGGCCGTCAGGCCCTGGTGTATGCAGAGCAGATGTTTCAGATCGGCAGCGAGCTTGAAGCCATGCTGCGTGCCGGCCCTCAAGAGCAGATCCTGTTCCGTGTGGGGGTGGCTGACGTGGTGCCCAAATCCATTGTCTACCGCCTGCTGGCACCGACCATGGACCTGGAGGAGGTGCTGCGCATCAACTGCCGCGAGGACAAACT  <  AE015451/2792374‑2792153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.