| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 3941236 = | 36 (0.620) | 4 (0.070) | 4/324 | NT | 10.4% | coding (322/387 nt) | PP_3476 | Type II secretion system protein G |
| ? | AE015451 | 3941263 = | 35 (0.640) | coding (295/387 nt) | PP_3476 | Type II secretion system protein G | |||||
ACCATCGCCATGCCGCGCTACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3941476‑3941236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcggcgGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGC > AE015451/3941263‑3941435 ACCATCGCCATGCCGCGCTACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGG > 1:1053616/1‑235ACCATCGCCATGCCGCGCTACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGC > 2:644978/1‑233 CGCGCTACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCG > 1:524697/1‑225 TACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCG > 2:547083/1‑220 AGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCGGCACCAGCTGCCAGGCATCGC < 1:908503/235‑1 GACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACCACTGGTGGAACAACGTTACCTGCGCAACCCACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGT < 1:7896/198‑1 CCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCAGCCGCCCGAGGGTGTGGCGGGC > 2:359107/1‑128 TCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGCGGCGGGa > 2:281981/1‑110 CGTTCCCTGCGCAACACACCGGTCGCCCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGC < 1:805372/115‑1 TTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCG > 2:248112/1‑86 AGCGCAGCGTTGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGG < 2:253735/91‑1 GGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGC < 1:982030/174‑1 ACCATCGCCATGCCGCGCTACTTCAACAGCCTGGAAAGCTCGCGCGAGGCCACCCTGCGTCAGAGCCTGGCAGTGCTGCGCGAGGCGCTGGACCACTACTACGGTGATACCGGCCACTACCCCGACTCGCTGGAACAACTGGTGGAACAACGTTACCTGCGCAACACACCGGTCGACCCGATCACCGAGCGCAGCGATGCCTGGCAGCTGGTGCCGCCGCCCGAGGGTGTGGCGGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3941476‑3941236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcggcgGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGC > AE015451/3941263‑3941435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |