New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3941236 =	36 (0.620)	4 (0.070)	4/324	NT	10.4%	coding (322/387 nt)	PP_3476	Type II secretion system protein G
	?	AE015451	3941263 =	35 (0.640)					coding (295/387 nt)	PP_3476	Type II secretion system protein G

GCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTAGCGCGGCATGGCGATGGT  >  AE015451/3941049‑3941476                                                                                                                                                                                                                       |                                                                                                                                                                                                                      agcctggaaagctcgcgcgaggccaccctgcgtcagagcctggcagtgctgcgcgaggcgctggaccactactacggtgataccggccactaccccgactcgctggaacaactggtggaacaacgttacctgcgcaacacaccggtcgacccgatcaccgagcgcagcgatgcctggcagctggtgccgccgcccgagggtgtggcgggcggcgGCACCAGCTGCCAGGCATCGc                                                                                                                                                                                                   <  1:908503‑M2/21‑1 (MQ=255)                     cgcTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTgc                                                                                                                                                                                                <  1:1019019/218‑1 (MQ=255)                             ggcgCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGgtgt                                                                                                                                                                       >  1:978317/1‑235 (MQ=255)                                                  ggTGGCCGCCAGGGCCACGCTGCTGACCGCAACCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGggcggcgg                                                                                                                                                                                                                       <  1:1070426/166‑1 (MQ=255)                                                         gccAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCt                                                                                                                                                                                                  >  2:589053/1‑180 (MQ=255)                                                                gaccactactacggtgataccggccactaccccgactcgctggaaccactggtggaacaacgttacctgcgcaacccaccggtcgacccgatcaccgagcgcagcgatgcctggcagctggtgccgccgcccgagggtgtggcgggcggcgGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGgt                                                                                                                                                                         <  1:7896‑M2/47‑1 (MQ=255)                                                                      tgctgACCGCAGTCTGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCCCCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAgg                                                                                                                                                                                                         >  2:1053613/1‑160 (MQ=255)                                                                           aCCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACTTTGTTCCACCAGTTGTTCCAGCGAGTCggg                                                                                                                          >  1:663718/1‑234 (MQ=255)                                                                                   cagcagcagCACCCCCGGGTATGTAAAGCCGCGGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCCCGGGCGGCGGCAc                                                                                                                                                                                                                    <  1:528015/136‑1 (MQ=255)                                                                                   cagcagcagCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCg                                                                                                                >  1:885019/1‑236 (MQ=255)                                                                                        gcagcaCCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTAt                                                                                                            >  1:397425/1‑235 (MQ=255)                                                                                            caCCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTccacca                                                                                                                                             >  2:495760/1‑198 (MQ=255)                                                                                               ccccAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCgtag                                                                                                    >  1:411775/1‑236 (MQ=255)                                                                                                         gTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCCCGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCCCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAg                                                                                                                      <  1:829369/208‑1 (MQ=255)                                                                                                          tAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGt                                                                                                                                                                                 >  1:248115/1‑148 (MQ=255)                                                                                                            aggccgccGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAg                                                                                                                      <  2:885016/203‑1 (MQ=255)                                                                                                             aGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCGGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCgg                                                                                                               <  1:453419/211‑1 (MQ=255)                                                                                                                  ccgTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAg                                                                                                                                   >  1:1066839/1‑186 (MQ=255)                                                                                                                  ccgTTGGCCGTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGCCACCGCTCTTGACGTCGGCCACGCCGCCCGCCGCACCCTCGGGCGGCGGCACCAGCTGCCAGGc                                                                                                                                                                                                        >  2:748036/1‑117 (MQ=255)                                                                                                                       ggCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCgcagc                                                                            >  1:64323/1‑236 (MQ=255)                                                                                                                         ccTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCgtag                                                                                                    <  1:375528/210‑1 (MQ=255)                                                                                                                            cgttccctgcgcaacacaccggtcgccccgatcaccgagcgcagcgatgcctggcagctggtgccgccgcccgagggtgtggcgggcggcgGCACCAGCTGCCAGGCATCGCTgc                                                                                                                                                                                                <  1:805372‑M2/24‑1 (MQ=255)                                                                                                                                     gCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACgttgtt                                                                                                                                                   >  2:648889/1‑151 (MQ=255)                                                                                                                                     gCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCgg                                                                                                               >  2:1080496/1‑187 (MQ=255)                                                                                                                                      cGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGAcc                                                                                                                                                                            >  2:438195/1‑125 (MQ=255)                                                                                                                                         agagGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCCCGGTg                                                                                                                                                                                        >  2:1046523/1‑110 (MQ=255)                                                                                                                                             accggtcgacccgatcaccgagcgcagcgatgcctggcagctggtgcCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGGGTTGCGCAGGTAACGTTGTTCCACCAGTGGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTc                                                                                            <  1:7896‑M1/151‑1 (MQ=255)                                                                                                                                              cTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCgggg                                                                                                                                                                                        >  2:222988/1‑103 (MQ=255)                                                                                                                                               tGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCg                                                                                                                                 <  2:981742/159‑1 (MQ=255)                                                                                                                                                gCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCAc                                                                                                         <  1:847371/182‑1 (MQ=255)                                                                                                                                                   aTCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCt                                                >  1:896188/1‑236 (MQ=255)                                                                                                                                                    tCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCgg                                                                                                               <  1:1053551/172‑1 (MQ=255)                                                                                                                                                       ccgatcaccgagcgcagcgatgcctggcagctggtgcCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCAACGCTGCGCt                                                                                                                                                                                             <  2:253735‑M1/54‑1 (MQ=255)                                                                                                                                                        gcgcCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTa                                                                                                                       <  2:634233/160‑1 (MQ=255)                                                                                                                                                        gcgcCCCCCCGGTGGCACCGCTCTTGATGTCGGCCCCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCgg                                                                                                                                                                                   <  2:815045/100‑1 (MQ=255)                                                                                                                                                                 agcgcagcgttgcctggcagctggtgccgccgcccgagggtgtggcgggcggcgGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCgg                                                                                                                                                                                   <  2:253735‑M2/37‑1 (MQ=255)                                                                                                                                                                    gcagcgatgcctggcagctggtgcCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGGCGACCGGTGTGTTGCGCAGGGAACg                                                                                                                                                        <  1:805372‑M1/91‑1 (MQ=255)                                                                                                                                                                       gcgatgcctggcagctggtgcCGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCt                             <  1:908503‑M1/214‑1 (MQ=255)                                                                                                                                                                       cACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCgccgca                                                                           >  2:91718/1‑189 (MQ=255)                                                                                                                                                                             tctTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGaa                       >  1:873687/1‑235 (MQ=255)                                                                                                                                                                                  aTGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAgc                                                                                        <  2:931933/165‑1 (MQ=255)                                                                                                                                                                                       ggCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCgggg                                                                                                                         <  1:402279/127‑1 (MQ=255)                                                                                                                                                                                        gCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTa                    <  2:397422/227‑1 (MQ=255)                                                                                                                                                                                         ccACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAg                                        >  2:524694/1‑206 (MQ=255)                                                                                                                                                                                          cACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCGAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGgtc                                                                                                                                                                        >  2:927760/1‑76 (MQ=255)                                                                                                                                                                                               CGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTaa                                                                                                                                                          >  2:248112‑M1/1‑86 (MQ=255)                                                                                                                                                                                               CGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTa                    >  2:547083‑M1/1‑220 (MQ=255)                                                                                                                                                                                               CGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTAGcgcg               >  1:524697‑M1/1‑225 (MQ=255)                                                                                                                                                                                                tCCCGCCGCACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGa                                                                                                                                >  2:281981‑M1/2‑111 (MQ=255)                                                                                                                                                                                                GCCCGCCACACCCTCGGGCGGCTGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCgg                                                                                                               >  2:359107‑M1/1‑128 (MQ=255)                                                                                                                                                                                                  CCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTAGCGCGGCATGGCGATGGt  >  1:1053616‑M1/1‑235 (MQ=255)                                                                                                                                                                                                    GCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTAGCGCGGCATGGCGATGGt  >  2:644978‑M1/1‑233 (MQ=255)                                                                                                                                                                                                                      gGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTcgcgc                                           <  1:982030‑M2/173‑1 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                      GCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTGCGCAGGTAACGTTGTTCCACCAGTTGTTCCAGCGAGTCGGGGTAGTGGCCGGTATCACCGTAGTAGTGGTCCAGCGCCTCGCGCAGCACTGCCAGGCTCTGACGCAGGGTGGCCTCGCGCGAGCTTTCCAGGCTGTTGAAGTAGCGCGGCATGGCGATGGT  >  AE015451/3941049‑3941476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.