New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4279883	40 (0.690)	4 (0.070)	3/324	NT	8.9%	coding (1083/1434 nt)	PP_3750	Transcriptional regulator, GntR family
	?	AE015451	= 4280008	44 (0.810)					coding (1208/1434 nt)	PP_3750	Transcriptional regulator, GntR family

TACCACGGGCCAGCCTCGGACGCGCTGCAGCGTCTGGACCGGCATGGGCTGGTCGCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4279683‑4279883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCAGGATGCGCTCGCGGCGTGCGCTGTAGACCTCGTGGCAGCGGCGGATGTGCTTGTTCAGGTGGCCTTCGCCAAGGAAGCGCGCCAGCGCCCACTG  <  AE015451/4280008‑4279869                                                                                                                                                                                                                                                                                                                                                       TACCACGGGCCAGCCTCGGACGCGCTGCAGCGTCTGGACCGGCATGGGCTGGTCGCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTTTTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTCGGCG                                                                                                                                                    >  1:1042650/1‑195                              GCGTCTGGACCGGCATGGGCTGGTCGCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGC                                                                                                                                               <  1:36119/171‑1                                                       GCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCA                                                                                                <  1:920755/193‑1                                                       GCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCA                                                                                                >  2:920752/1‑193                                                                                                                                                CGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGGGGGCGCTGGCGGGGGTGGCGgc                                                                                                                                   >  1:111364/1‑67                                                                                                                                                                                           CAGTGGGCGCTGGCGGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCAGGATGCGCTCGCGGCGTGCGCTGTAGACCTCGTGGCAGCGGCGGATGTGCTTGTTCAGGTGGCCTTCGCCAAGGAAGCGCGCCAGCGCCCACTG  >  1:992795/1‑155                                                                                                                                                                                                GGCGCTGGCGGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGG                                                                                                       >  1:417142/1‑49                                                                                                                                                                                                     TGGCGGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCCGGATGCGCTCGCGGCGTGCG                                                                            >  2:294028/1‑71                                                                                                                                                                                                                                                                                                                                                       TACCACGGGCCAGCCTCGGACGCGCTGCAGCGTCTGGACCGGCATGGGCTGGTCGCCTACGTCGGGACCTTCTCCAAGACCTTGCTGCCCGAGCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4279683‑4279883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgGGGATGGCGCTGAACCACGGTGCCAGATCGCCGCCCAGGCGCGCCAGGATGCGCTCGCGGCGTGCGCTGTAGACCTCGTGGCAGCGGCGGATGTGCTTGTTCAGGTGGCCTTCGCCAAGGAAGCGCGCCAGCGCCCACTG  <  AE015451/4280008‑4279869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.