New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4279883	40 (0.690)	4 (0.070)	3/324	NT	8.9%	coding (1083/1434 nt)	PP_3750	Transcriptional regulator, GntR family
	?	AE015451	= 4280008	44 (0.810)					coding (1208/1434 nt)	PP_3750	Transcriptional regulator, GntR family

GCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGATCGGTGCGG  >  AE015451/4279775‑4280243                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            gCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATccc                                                                                                                                                                                                                                             >  2:1014229/1‑234 (MQ=255)                                  cGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCa                                                                                                                                                                                                          >  1:40186/1‑236 (MQ=255)                                                                          tGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcgcgc                                                                                                                                                                   <  1:1037717/235‑1 (MQ=255)                                                                              acaGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCTCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTa                                                                                                                                                                >  2:661623/1‑234 (MQ=255)                                                                                        ccTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagaggta                                                                                                                                                     <  1:451920/235‑1 (MQ=255)                                                                                        ccTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTCGGCCAACCTCGCGCGTAaggtagaggta                                                                                                                                                     <  1:603579/235‑1 (MQ=255)                                                                                          tgctgcAGTGGGCGCTGGCGCGCTTCCCTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagag                                                                                                                                                        <  1:774786/230‑1 (MQ=255)                                                                                             tgcAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCt                                                                                                                                                <  1:485754/235‑1 (MQ=255)                                                                                               cAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCcgccagcgcccactg                                                                                                                                                                                                                              >  1:992795‑M2/1‑140 (MQ=255)                                                                                               cAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCtt                                                                                                                                                                                                               >  2:1021369/1‑170 (MQ=255)                                                                                               cAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCtt                                                                                                                                                                                                               <  1:1021372/170‑1 (MQ=255)                                                                                               cAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTg                                                                                                                                               >  2:1061023/1‑234 (MQ=255)                                                                                                aGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcgc                                                                                                                                                                     <  2:637162/211‑1 (MQ=255)                                                                                                              cgcTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcgc                                                                                                                                                                     <  2:468983/197‑1 (MQ=255)                                                                                                                                  ccTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTAc                                                                                                          <  1:496096/236‑1 (MQ=255)                                                                                                                                        cAAGCACCTGCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGTGCGGCGTTCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCgg                                                                                                                                                                                                   <  2:1034097/141‑1 (MQ=255)                                                                                                                                         aaGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAgg                                                                                                                   >  2:1044701/1‑220 (MQ=255)                                                                                                                                              caTCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGt                                                                                                                                                                                                                    >  2:417443/1‑118 (MQ=255)                                                                                                                                                tCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTAtt                                                                                             >  1:782856/1‑235 (MQ=255)                                                                                                                                                  cgccgcTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCAc                                                                                                                                        <  1:130371/190‑1 (MQ=255)                                                                                                                                                           cccGAGGTCTCCAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCCCCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAg                                                                                                                        <  1:171912/195‑1 (MQ=255)                                                                                                                                                                       aGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGaa                                                                       >  1:72907/1‑234 (MQ=255)                                                                                                                                                                       aGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAAc                                                                      >  1:988964/1‑235 (MQ=255)                                                                                                                                                                         cgcACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAActg                                                                    <  1:1019299/235‑1 (MQ=255)                                                                                                                                                                         cgcACGCCGCGAGCGCATCCGGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCcgcca                                                                                                                                                                                                                                        >  2:294028‑M2/1‑66 (MQ=255)                                                                                                                                                                            ccgccgcGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGa                                                                                                                     <  1:270787/182‑1 (MQ=255)                                                                                                                                                                              gccgcGAGCGCATCCTGTCGCGCCTGGGCGGCGAGCTGGCACCGTGGTTCAGCGCCATCCCCGCCACCGCAGGCTTCCCCCCCAGGGCCTTGGCCAc                                                                                                                                                                                                         >  2:325199/1‑97 (MQ=255)                                                                                                                                                                               ccgcGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCACCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGCGGATGTGGAGCTGTTGGCCAACCTcgcgcg                                                                                                                                                                  >  2:289631/1‑135 (MQ=255)                                                                                                                                                                                cgcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcgc                                                                                                                                                                     <  1:292802/131‑1 (MQ=255)                                                                                                                                                                                cgcgACCGCACCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGa                                                                                                                     <  1:180397/179‑1 (MQ=255)                                                                                                                                                                                 gcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCAc                                                                                                                                                                                                         <  2:479253/94‑1 (MQ=255)                                                                                                                                                                                 gcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCAc                                                                                                                                                                                                         >  1:479256/1‑94 (MQ=255)                                                                                                                                                                                 gcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggta                                                                                                                                                           >  1:251919/1‑140 (MQ=255)                                                                                                                                                                                 gcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTAt                                                                                              >  2:697996/1‑201 (MQ=255)                                                                                                                                                                                            cgggCGCGCCTGGGTGGCGCTCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcgcg                                                                                                                                                                    <  2:254401/118‑1 (MQ=255)                                                                                                                                                                                            cTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCt                                                <  1:1014232/236‑1 (MQ=255)                                                                                                                                                                                             tGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCcgccagcgcccactgcagcagggtagggctgtgccagtcgctaaggtgcttggccacgcaagcggcctgcagtacggcaggcggtaatacggcatagcccaggcgcagctcgggcagcaaggtcttggagaaggtcccgacgtaggc                                                                                          <  1:920755‑M2/193‑148 (MQ=255)                                                                                                                                                                                             tGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCcgccagcgcccactgcagcagggtagggctgtgccagtcgctaaggtgcttggccacgcaagcggcctgcagtacggcaggcggtaatacggcatagcccaggcgcagctcgggcagcaaggtcttggagaaggtcccgacgtaggc                                                                                          >  2:920752‑M2/1‑46 (MQ=255)                                                                                                                                                                                                 gcgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTgg                                                                                                                                                                                        <  2:195127/95‑1 (MQ=255)                                                                                                                                                                                                  cgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCg                                                          <  2:988961/220‑1 (MQ=255)                                                                                                                                                                                                    ccTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCcgccagcgcc                                                                                                                                                                                                                                   >  1:417142‑M2/1‑39 (MQ=255)                                                                                                                                                                                                     cTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCGTCCACCTCAGTGc                                                                                                                                                                                                                  >  2:166836/1‑65 (MQ=255)                                                                                                                                                                                                       gggCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCa                                                                                                                                         >  1:257527/1‑136 (MQ=255)                                                                                                                                                                                                                     cACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGGACGCGATACCCCGcc                        >  1:197308/1‑234 (MQ=255)                                                                                                                                                                                                                        cGTGGTCCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTAc                                                                                                          <  1:326560/150‑1 (MQ=255)                                                                                                                                                                                                                          tGGTTCCGCGCCACCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCg                                                     <  1:306931/201‑1 (MQ=255)                                                                                                                                                                                                                             ttCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCa                >  1:718376/1‑235 (MQ=255)                                                                                                                                                                                                                                gccgccaCCCCcgccagcgccccctgcagcagggtagggctgtgccagtcgctaaggtgcttggccacg                                                                                                                                                                                   >  1:111364‑M2/3‑11 (MQ=255)                                                                                                                                                                                                                                  cgcCACCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCt                                                                                                                                                                        <  1:275336/78‑1 (MQ=255)                                                                                                                                                                                                                                  cgcCACCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTg            <  1:198788/234‑1 (MQ=255)                                                                                                                                                                                                                                   gcCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                                          <  1:120676/171‑1 (MQ=255)                                                                                                                                                                                                                                      aTCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGAc                                            <  1:219500/198‑1 (MQ=255)                                                                                                                                                                                                                                         cccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagaggt                                                                                                                                                      <  2:257524/89‑1 (MQ=255)                                                                                                                                                                                                                                          ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagaggta                                                                                                                                                     <  1:700856/89‑1 (MQ=255)                                                                                                                                                                                                                                          ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagaggta                                                                                                                                                     >  2:700853/1‑89 (MQ=255)                                                                                                                                                                                                                                          ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCCGTTGATCGGTGCgg  >  1:906015/1‑236 (MQ=255)                                                                                                                                                                                                                                          ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTg            >  1:241335/1‑226 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            GCTGCGCCTGGGCTATGCCGTATTACCGCCTGCCGTACTGCAGGCCGCTTGCGTGGCCAAGCACCTTAGCGACTGGCACAGCCCTACCCTGCTGCAGTGGGCGCTGGCGCGCTTCCTTGGCGAAGGCCACCTGAACAAGCACATCCGCCGCTGCCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGATCGGTGCGG  >  AE015451/4279775‑4280243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.