New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4290853	43 (0.750)	4 (0.070)	4/324	NT	8.9%	coding (1734/3468 nt)	PP_3761	Sensor histidine kinase/response regulator
	?	AE015451	= 4290920	41 (0.750)					coding (1667/3468 nt)	PP_3761	Sensor histidine kinase/response regulator

GAAGATCGCCTGCTGCTGATCGGCCGCAATGCCGATGCCGGTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4290613‑4290853 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaagcTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGGAGCAGATCCTCAAGAACCTGTTGTCCAACGCCATCAAGTTCACCGAGCGTGGCCAGGTCAGCATGAACGTCAGCTTCCAG  <  AE015451/4290920‑4290688                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAGATCGCCTGCTGCTGATCGGCCGCAATGCCGATGCCGGTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACC                                                                                                                                                                                                                                                  >  2:831590/1‑234                                                                                                            ggTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGG                                                                                                                                                                                                                                                <  2:504534/127‑1                                                                                                                                                           TCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTT                                                                                                                                                                                          <  1:1086824/136‑1                                                                                                                                                           TCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTT                                                                                                                                                                                          >  2:1086821/1‑136                                                                                                                                                                                         ACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTT                                                                                                                                             >  1:532255/1‑151                                                                                                                                                                                                              TTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGG                                                                                                                >  1:749124/1‑159                                                                                                                                                                                                                                         cgGGCAAGCTTGAAGTACGGCCCGAAACCCCCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGG                                                                                  <  1:140537/160‑1                                                                                                                                                                                                                                         CCGGCAAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGGAGCAGATCCTCAAGAACCTGTTGTCCAACGCCATCAAGTTCACCGAGCGTGGCCAGGTCAGCATGAACGTCAG         >  1:1006870/1‑235                                                                                                                                                                                                                                           GGCAAGCTTGAAGTACGGCCCAAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGGAGCAGATCCTCAAGAACCTGTTGTCCAACGCC                                                  >  2:441059/1‑192                                                                                                                                                                                                                                              AAGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCG                                                                                             <  2:1046296/146‑1                                                                                                                                                                                                                                               AGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGGAGCAGATCCTCAAGAACCTGTTGTCCAACGCCATCAAGTTCACCGAGCGTGGCCAGGTCAGCATGAACGTCAGCTTCCAG  >  1:675731/1‑236                                                                                                                                                                                                                                               AGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGA                                                                                                                                          >  1:855878/1‑100                                                                                                                                                                                                                                               AGCTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGA                                                                                                                                          <  2:855875/100‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAGATCGCCTGCTGCTGATCGGCCGCAATGCCGATGCCGGTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4290613‑4290853 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaagcTTGAAGTACGGCCCGAAACCACCCAGGTCGAGCGCCTGGTCGAAGGCTTGCGCGGCATGTTCCAGCCGCTTGCCGGTCACAAGGGGCTGGCCTTCGAGGTCAAGGTCGAGCCGCAGGTACCGGTCACGCTGTTCACCGACCGTCAGCGCCTGGAGCAGATCCTCAAGAACCTGTTGTCCAACGCCATCAAGTTCACCGAGCGTGGCCAGGTCAGCATGAACGTCAGCTTCCAG  <  AE015451/4290920‑4290688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.