New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4290853	43 (0.750)	4 (0.070)	4/324	NT	8.9%	coding (1734/3468 nt)	PP_3761	Sensor histidine kinase/response regulator
	?	AE015451	= 4290920	41 (0.750)					coding (1667/3468 nt)	PP_3761	Sensor histidine kinase/response regulator

GCCGCAATGCCGATGCCGGTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGG  >  AE015451/4290635‑4291086                                                                                                                                                                                                                           |                                                                                                                                                                                                                                          gCCGCAATGCCGATGCCGGTGTCTCGGACTGCGACCACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCGGGCCACGCTCGGTGAACTTGATAGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCcg                                                                                                                                                                                                                            <  1:188267/234‑1 (MQ=255)                  ggTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTg                                                                                                                                                                                                                                      >  1:282985/1‑207 (MQ=255)                  ggTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGgc                                                                                                                                                                                                         <  1:804579/236‑1 (MQ=255)                   gtgtCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGgc                                                                                                                                                                                                         <  1:399173/235‑1 (MQ=255)                                 gAACACGATACCGCTGTCATCCTGGAAGCTGACGGTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGAGCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGGGACCGGCAAGCGGCTGGa                                                                                                                                                                                                                                    >  1:311903/1‑194 (MQ=255)                                   acacGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGc                                                                                                                                                                                                                                        >  2:835859/1‑188 (MQ=255)                                           ccGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGcc                                                                                                                                                                                 >  1:566979/1‑235 (MQ=255)                                                 tCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTc                                                                                                                                                                          <  1:781060/236‑1 (MQ=255)                                                  cAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCcg                                                                                                                                                                                                                            >  2:725551/1‑185 (MQ=255)                                                    gCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCaa                                                                                                                                                                        >  2:1006867/1‑235 (MQ=255)                                                      cTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACa                                                                                                                                                                                                                                 >  1:304230/1‑176 (MQ=255)                                                      cTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTc                                                                                                                                                                                                     >  2:781057/1‑204 (MQ=255)                                                      cTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                     >  1:675731‑M2/1‑233 (MQ=255)                                                             cTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccgg                                                                                                                                                               >  1:1006870‑M2/1‑226 (MQ=255)                                                                 cGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTc                                                                                                                                                           >  1:880113/1‑235 (MQ=255)                                                                  gTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCgg                                                                                                                                                                                    >  1:691314/1‑209 (MQ=255)                                                                  gTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCgg                                                                                                                                                                                    <  2:691311/209‑1 (MQ=255)                                                                  gTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGa                                                                                                                                                         >  1:736520/1‑236 (MQ=255)                                                                   ttCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCCCGAccc                                                                                                                                                                                                >  1:86376/1‑195 (MQ=255)                                                                       tGCTGGCCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTg                                                                                                                                                    <  1:346525/236‑1 (MQ=255)                                                                                        tCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGc                                                                                                                                                  <  1:53014/221‑1 (MQ=255)                                                                                                      ggCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTTGGGCCGTACTTCAAgcttgcc                                                                                                                                                                 >  2:441059‑M2/1‑185 (MQ=255)                                                                                                              acaacaGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCg                                                                                                             >  1:791854/1‑236 (MQ=255)                                                                                                                     gTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGGTATCGCGAATGTCGTTGATCAGGTTGAGCAGATCGTTgccg                                                                                                       >  1:940977/1‑235 (MQ=255)                                                                                                                             ggATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTa                                                                                               >  1:636484/1‑235 (MQ=255)                                                                                                                                   gCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCga                                                                                                                                          <  2:1004345/186‑1 (MQ=255)                                                                                                                                   gCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCga                                                                                                                                          >  1:1004348/1‑186 (MQ=255)                                                                                                                                     tCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggctt                                                                                                                                                                                          >  2:1086821‑M1/1‑87 (MQ=255)                                                                                                                                     tCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggctt                                                                                                                                                                                          <  1:1086824‑M1/136‑50 (MQ=255)                                                                                                                                      ccAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCg                                                                                     >  1:923768/1‑236 (MQ=255)                                                                                                                                      ccAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGGGGTTTCGGGCCGTACTTCAAgcttgcccg                                                                                                                                                               <  1:140537‑M2/162‑10 (MQ=255)                                                                                                                                              tGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAAtgttgt                                                                                                                                 <  2:577374/184‑1 (MQ=255)                                                                                                                                                 cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACCTGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTCTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgaga                                                                                                                                        >  2:41938/1‑174 (MQ=255)                                                                                                                                                 cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgctt                                                                                                                                                                    <  2:1046296‑M2/146‑5 (MQ=255)                                                                                                                                                 cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCCGGTTGAGCAGATCGTTGCCGGCCGAGTAGATg                                                                                           >  1:323231/1‑219 (MQ=255)                                                                                                                                                  ggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTg                                                                            <  2:923765/233‑1 (MQ=255)                                                                                                                                                   gtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCt                                                                        <  1:831593/236‑1 (MQ=255)                                                                                                                                                        tGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGAcc                                                                         >  1:783062/1‑230 (MQ=255)                                                                                                                                                             aGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGGTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgg                                                                                                                                          >  2:131969/1‑159 (MQ=255)                                                                                                                                                                 tGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGGGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgag                                                                                                                                         >  1:158090/1‑157 (MQ=255)                                                                                                                                                                   aCCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggcctt                                                                                                                                             >  1:532255‑M1/1‑57 (MQ=255)                                                                                                                                                                    ccGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaa                                                                                                                                    >  1:749124‑M2/1‑123 (MQ=255)                                                                                                                                                                    ccGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTg                                                                                                                               >  1:814032/1‑164 (MQ=255)                                                                                                                                                                        tACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCACCTTGTGACCGGCAGGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCt                                                                                                                                                      <  2:8206/137‑1 (MQ=255)                                                                                                                                                                                 cTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGtt                                            >  2:848816/1‑234 (MQ=255)                                                                                                                                                                                        ttGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccgg                                                                                                                >  1:749124‑M1/1‑36 (MQ=255)                                                                                                                                                                                              tCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                     <  2:855875‑M2/100‑4 (MQ=255)                                                                                                                                                                                              tCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                     >  1:855878‑M2/1‑97 (MQ=255)                                                                                                                                                                                                 aaGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggt                                                                                                               >  1:532255‑M2/1‑94 (MQ=255)                                                                                                                                                                                                   ggCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTgccggcc                                                                                                    >  2:802885/1‑160 (MQ=255)                                                                                                                                                                                                       cgCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGgc                                                                                                                                                                                                         <  2:230778/54‑1 (MQ=255)                                                                                                                                                                                                        gCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGTATGTCGTTGCTCAGGTTGAGCAGATCGTTGCCGTCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGtt                                                        >  1:214269/1‑199 (MQ=255)                                                                                                                                                                                                         ccccTCGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCtt                             <  1:118195/225‑1 (MQ=255)                                                                                                                                                                                                          cccTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCa                  <  1:848819/235‑1 (MQ=255)                                                                                                                                                                                                               gtgACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCgctg            >  1:534115/1‑233 (MQ=255)                                                                                                                                                                                                                 gACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGACTGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGGTTTCTGcc                                     >  2:1050977/1‑209 (MQ=255)                                                                                                                                                                                                                 gACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCgg                                                                                    >  2:695241/1‑162 (MQ=255)                                                                                                                                                                                                                   cgggcaAGCttgaagtacggcccgaaaccccccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctgg                                                                                  <  1:140537‑M1/160‑154 (MQ=255)                                                                                                                                                                                                                   ccGGCAAGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctggagcagatcctcaagaacctgttgtccaacgccatcaagttcaccgagcgtggccaggtcagcatgaacgtcag         >  1:1006870‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                     ggCAAGCttgaagtacggcccaaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctggagcagatcctcaagaacctgttgtccaacgcc                                                  >  2:441059‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                      gCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGa      >  1:881281/1‑235 (MQ=255)                                                                                                                                                                                                                       cAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTg       >  2:941431/1‑233 (MQ=255)                                                                                                                                                                                                                        aaGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccg                                                                                             <  2:1046296‑M1/146‑143 (MQ=255)                                                                                                                                                                                                                         aGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctggagcagatcctcaagaacctgttgtccaacgccatcaagttcaccgagcgtggccaggtcagcatgaacgtcagcttccag  >  1:675731‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                         aGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcga                                                                                                                                          >  1:855878‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                         aGCttgaagtacggcccgaaaccacccaggtcgagcgcctggtcgaaggcttgcgcggcatgttccagccgcttgccggtcacaaggggctggccttcga                                                                                                                                          <  2:855875‑M1/100‑98 (MQ=255)                                                                                                                                                                                                                         aGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGc                               >  2:397306/1‑207 (MQ=255)                                                                                                                                                                                                                          gCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAgcgg  >  1:757631/1‑235 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                          GCCGCAATGCCGATGCCGGTGTCACGGACTGCGAACACGATACCGCTGTCAGCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGG  >  AE015451/4290635‑4291086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.