New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4290853	43 (0.750)	4 (0.070)	4/324	NT	8.9%	coding (1734/3468 nt)	PP_3761	Sensor histidine kinase/response regulator
	?	AE015451	= 4290920	41 (0.750)					coding (1667/3468 nt)	PP_3761	Sensor histidine kinase/response regulator

GCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCG  >  AE015451/4290686‑4291123                                                                                                                                                                                                                                           |                                                                                                                                                                                                            gCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCaa                                                                                                                                                                                                             >  2:1006867/1‑235 (MQ=255)   cTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                                                          >  1:675731‑M2/1‑233 (MQ=255)          cTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccgg                                                                                                                                                                                                    >  1:1006870‑M2/1‑226 (MQ=255)              cGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTc                                                                                                                                                                                                >  1:880113/1‑235 (MQ=255)               gTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGa                                                                                                                                                                                              >  1:736520/1‑236 (MQ=255)                    tGCTGGCCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTg                                                                                                                                                                                         <  1:346525/236‑1 (MQ=255)                                     tCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGc                                                                                                                                                                                       <  1:53014/221‑1 (MQ=255)                                                   ggCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTTGGGCCGTACTTCAAgcttgcc                                                                                                                                                                                                      >  2:441059‑M2/1‑185 (MQ=255)                                                           acaacaGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCg                                                                                                                                                  >  1:791854/1‑236 (MQ=255)                                                                  gTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGGTATCGCGAATGTCGTTGATCAGGTTGAGCAGATCGTTgccg                                                                                                                                            >  1:940977/1‑235 (MQ=255)                                                                          ggATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTa                                                                                                                                    >  1:636484/1‑235 (MQ=255)                                                                                gCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCga                                                                                                                                                                               <  2:1004345/186‑1 (MQ=255)                                                                                gCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCga                                                                                                                                                                               >  1:1004348/1‑186 (MQ=255)                                                                                   ccAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCg                                                                                                                          >  1:923768/1‑236 (MQ=255)                                                                                   ccAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGGGGTTTCGGGCCGTACTTCAAgcttgcccg                                                                                                                                                                                                    <  1:140537‑M2/162‑10 (MQ=255)                                                                                           tGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAAtgttgt                                                                                                                                                                      <  2:577374/184‑1 (MQ=255)                                                                                              cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACCTGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTCTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgaga                                                                                                                                                                             >  2:41938/1‑174 (MQ=255)                                                                                              cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgctt                                                                                                                                                                                                         <  2:1046296‑M2/146‑5 (MQ=255)                                                                                              cggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCCGGTTGAGCAGATCGTTGCCGGCCGAGTAGATg                                                                                                                                >  1:323231/1‑219 (MQ=255)                                                                                               ggtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTg                                                                                                                 <  2:923765/233‑1 (MQ=255)                                                                                                gtcggtGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCt                                                                                                             <  1:831593/236‑1 (MQ=255)                                                                                                     tGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGAcc                                                                                                              >  1:783062/1‑230 (MQ=255)                                                                                                          aGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGGTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgg                                                                                                                                                                               >  2:131969/1‑159 (MQ=255)                                                                                                              tGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGGGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCgag                                                                                                                                                                              >  1:158090/1‑157 (MQ=255)                                                                                                                 ccGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaa                                                                                                                                                                         >  1:749124‑M2/1‑123 (MQ=255)                                                                                                                 ccGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTg                                                                                                                                                                    >  1:814032/1‑164 (MQ=255)                                                                                                                     tACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCACCTTGTGACCGGCAGGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCt                                                                                                                                                                                           <  2:8206/137‑1 (MQ=255)                                                                                                                              cTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGtt                                                                                 >  2:848816/1‑234 (MQ=255)                                                                                                                                           tCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                                                          <  2:855875‑M2/100‑4 (MQ=255)                                                                                                                                           tCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgct                                                                                                                                                                                                          >  1:855878‑M2/1‑97 (MQ=255)                                                                                                                                              aaGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggt                                                                                                                                                    >  1:532255‑M2/1‑94 (MQ=255)                                                                                                                                                ggCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTgccggcc                                                                                                                                         >  2:802885/1‑160 (MQ=255)                                                                                                                                                     gCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGTATGTCGTTGCTCAGGTTGAGCAGATCGTTGCCGTCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGtt                                                                                             >  1:214269/1‑199 (MQ=255)                                                                                                                                                      ccccTCGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCtt                                                                  <  1:118195/225‑1 (MQ=255)                                                                                                                                                       cccTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCa                                                       <  1:848819/235‑1 (MQ=255)                                                                                                                                                            gtgACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCgctg                                                 >  1:534115/1‑233 (MQ=255)                                                                                                                                                              gACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGACTGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGGTTTCTGcc                                                                          >  2:1050977/1‑209 (MQ=255)                                                                                                                                                              gACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCgg                                                                                                                         >  2:695241/1‑162 (MQ=255)                                                                                                                                                                   gCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGa                                           >  1:881281/1‑235 (MQ=255)                                                                                                                                                                    cAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTg                                            >  2:941431/1‑233 (MQ=255)                                                                                                                                                                      aGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGc                                                                    >  2:397306/1‑207 (MQ=255)                                                                                                                                                                       gCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAgcgg                                       >  1:757631/1‑235 (MQ=255)                                                                                                                                                                         ggCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGt                                    <  1:941434/236‑1 (MQ=255)                                                                                                                                                                          gCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCga                                                                                                                                                                               <  2:56405/96‑1 (MQ=255)                                                                                                                                                                                   tGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCtt                                                                  <  2:534112/196‑1 (MQ=255)                                                                                                                                                                                       gcgcAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCt                                                                                                   >  2:895733/1‑159 (MQ=255)                                                                                                                                                                                           aaGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctgga                                                                                                                      >  2:1086821‑M2/1‑49 (MQ=255)                                                                                                                                                                                           aaGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAgcttgccggtcacaaggggctggccttcgaggtcaaggtcgagccgcaggtaccggtcacgctgttcaccgaccgtcagcgcctgga                                                                                                                      <  1:1086824‑M2/136‑88 (MQ=255)                                                                                                                                                                                                   gACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTgg             <  2:736517/233‑1 (MQ=255)                                                                                                                                                                                                              cGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCg  <  2:587496/233‑1 (MQ=255)                                                                                                                                                                                                                       cggtTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGCCCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCTGCGTTTTCTGCCAACCGCTTGGCCAGGATCCGctg                                                   >  1:208138/2‑173 (MQ=255)                                                                                                                                                                                                                          tttCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGCGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGt                                    <  1:840749/187‑1 (MQ=255)                                                                                                                                                                                                                              gggCCGTAGTTCAAGCTTGCCCGCTTCGAACTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGAGCGTTGCCGGCCGAGTAGATGGATTCGGAGAACTTGACCTGCTCCTCGCTGAAGTTGCCTTCAGCGTTTTCTGCCaa                                                                        <  2:1020635/147‑1 (MQ=255)                                                                                                                                                                                                                                      cTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGa       <  1:678794/204‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                            GCCTGGAAGCTGACGTTCATGCTGACCTGGCCACGCTCGGTGAACTTGATGGCGTTGGACAACAGGTTCTTGAGGATCTGCTCCAGGCGCTGACGGTCGGTGAACAGCGTGACCGGTACCTGCGGCTCGACCTTGACCTCGAAGGCCAGCCCCTTGTGACCGGCAAGCGGCTGGAACATGCCGCGCAAGCCTTCGACCAGGCGCTCGACCTGGGTGGTTTCGGGCCGTACTTCAAGCTTGCCGGCCTCGACCTTGGCGATATCGAGAATGTCGTTGATCAGGTTGAGCAGATCGTTGCCGGCCGAGTAGATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCG  >  AE015451/4290686‑4291123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.