New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4678714	58 (1.010)	3 (0.050)	3/324	NT	4.8%	coding (746/759 nt)	dnaQ	DNA polymerase III subunit epsilon
	?	AE015451	= 4678766	64 (1.170)					coding (694/759 nt)	dnaQ	DNA polymerase III subunit epsilon
Rejected: Frequency below/above cutoff threshold.

TCCTCGGCGATGCCCCGCACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4678479‑4678714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggcgGCCATTGCCAAGTCGGCGGGTGGGCCTTCGCTGTGGCAGGCCCTGACTGAGACGCCAGCCGGCTGATCTTTCGCCCTGCAACAGAAGTGGAGATCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGTACAGGCAATACAAGGCTCAACTACCCTGAAATGGACGCCACGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCAC  <  AE015451/4678766‑4678535                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCTCGGCGATGCCCCGCACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGC                                                                                                                                                                                                                                           <  1:993100/235‑1   CTCGGCGATGCCCCGCACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGC                                                                                                                                                                                                                                           >  2:374340/1‑233   CTCGGCGATGCCCCGCACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGC                                                                                                                                                                                                                                           <  2:703140/233‑1                   ACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGCG                                                                                                                                                                                                                                          <  1:605331/218‑1                                                                         GGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCT                                                                                                                                                                                                                                              >  2:959681/1‑160                                                                                                                                                                           GCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTCGCCGGGCGAAAGATCAGCCGGCTGG                                                                                                                                                                                                                                            <  2:764526/64‑1                                                                                                                                                                                                ACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGCGGCCATTGCCAAGTCGGCGGGTGGGACTTCGCTGTGGCAGGGGCTGAATGAGACGCCAGCCGGCT                                                                                                                                                                          >  2:601384/1‑109                                                                                                                                                                                                       CCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGCGGCCATTGCCAAGTCGGCGGGTGGGCCg                                                                                                                                                                                                               >  2:271770/1‑64                                                                                                                                                                                                                 TGCAGGGCGAAAGATCAGCCGGCTGGCGGCCATTGCCAAGTCGGCGGGTGGGCCTTCGCTGTGGCAGGCCCTGACTGAGACGCCAGCCGGCTGATCTTTCGCCCTGCAACAGAAGTGGAGATCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGTACGGGCAATACAAGG                                                                                         >  1:976637/1‑173                                                                                                                                                                                                                                    CGGCTGGCGGCCATTGCCAAGTCGGCGGGTGGGCCTTCGCTGTGGCAGGCCCTGACTGAGACGCCAGCCGGCTGATCTTTCGCCCTGCAACAGAAGTGGAGATCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGTACAGGCAATACAAGGCTCAACTACCCTGAAATGGACGCCACGTCCTTCGGAGGTAGCCACCTGATGTAC                                   <  2:1067789/208‑1                                                                                                                                                                                                                                          GCGGCCATTGCCAAGTCGGCGGGTGGGCCTTCGCTGTGGCAGGCCCTGACTGAGACGCCAGCCGGCTGATCTTTCGCCCTGCAACAGAAGTGGAGATCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGTACAGGCAATACAAGGCTCAACTACCCTGAAATGGACGCCACGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCAC  <  1:386168/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCTCGGCGATGCCCCGCACGCGCTCGCCGGCAACACTGTCGGCCTTGATGGCGCGGTGGACGATGAGGATCGGGAACTTGAGGTCCTTGTACATCAGGTGGCTACCTCCGAAGGACGTGGCGTCCATTTCAGGGTAGTTGAGCCTTGTATTGCCTGTACTGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGATCTCCACTTCTGTTGCAGGGCGAAAGATCAGCCGGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4678479‑4678714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggcgGCCATTGCCAAGTCGGCGGGTGGGCCTTCGCTGTGGCAGGCCCTGACTGAGACGCCAGCCGGCTGATCTTTCGCCCTGCAACAGAAGTGGAGATCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGTACAGGCAATACAAGGCTCAACTACCCTGAAATGGACGCCACGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCAC  <  AE015451/4678766‑4678535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.