New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4953742	59 (1.020)	3 (0.060)	3/320	NT	5.1%	coding (690/1692 nt)	PP_4363	Sensor histidine kinase/response regulator
	?	AE015451	= 4953780	57 (1.060)					coding (652/1692 nt)	PP_4363	Sensor histidine kinase/response regulator

ACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4953498‑4953742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccatgccgATGGCTGAGGTGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGCGGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCT  <  AE015451/4953780‑4953548                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGC                                                                                                                                                                                                                                                    <  1:835007/236‑1                                                                                                              gGGCATACCGCCATTCCACCCCCCCACCGAGCCGCGCTGCATGCGGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGATGGCTGAGGTGTTCTACGGCATGACC                                                                                                                                                                                                                <  2:342395/162‑1                                                                                                                    cCCGCCATTCCACCCCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATG                                                                                                                                                                                                                                              <  2:168529/126‑1                                                                                                                                        CCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGC                                                                                                                                                                                                                                                    >  1:607393/1‑101                                                                                                                                        CCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGC                                                                                                                                                                                                                                                    <  2:607390/101‑1                                                                                                                                                                                              CCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGATGGCTGAGGCGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGA                                                                                                                                                                             >  1:575303/1‑118                                                                                                                                                                                                      ATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGATGGCTGAGGTGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCC                                                                                                                                               >  2:357082/1‑140                                                                                                                                                                                                                                             GCCATGCCGATGGCAGAGGTGTTCTACGGCATGACGGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCAAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCG                                                                                             >  1:1028897/1‑151                                                                                                                                                                                                                                                   CCGATGGCTGAGGTGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGCGGTATGCCTGATGGCTACCGCCTGTCGGTGGATGGCCAAGTGCTGTCGG                     >  2:376510/1‑217                                                                                                                                                                                                                                                    CGATGGCTGAGGTGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGCGGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCT  >  1:494133/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4953498‑4953742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccatgccgATGGCTGAGGTGTTCTACGGCATGACCGCCAAGGGCTACGGCATGGCGCAGATCCTGCGCGAGATGAATGCCAAGCTCAAGCGCATCCTGCCGGTGGATATGTTCTGCTGTGCGCTGCTGCTCAATCTCAGCATGCAGCGCGGCTCGGTGGAGGTGTGGAATGGCGGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCT  <  AE015451/4953780‑4953548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.