New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4953742	59 (1.020)	3 (0.060)	3/320	NT	5.1%	coding (690/1692 nt)	PP_4363	Sensor histidine kinase/response regulator
	?	AE015451	= 4953780	57 (1.060)					coding (652/1692 nt)	PP_4363	Sensor histidine kinase/response regulator

TCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACC  >  AE015451/4953515‑4953976                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                            tCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCt                                                                                                                                                                                                                                      >  1:910390/1‑235 (MQ=255) tCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCt                                                                                                                                                                                                                                      >  1:360970/1‑235 (MQ=255)      aCGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCgg                                                                                                                                                                                                                                <  1:963220/236‑1 (MQ=255)         cTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCa                                                                                                                                                                                                                             <  1:74723/236‑1 (MQ=255)                gCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTa                                                                                                                                                                                                                      <  1:424489/236‑1 (MQ=255)                     aaTGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAaca                                                                                                                                                                                                                <  1:1039714/236‑1 (MQ=255)                                  aGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcg                                                                                                                                                                                                    >  1:494133‑M2/1‑233 (MQ=255)                                                     ccGACAGCACTTGGCCATCCACCGACAGGCGGTAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcgg                                                                                                                                                                                                   >  2:376510‑M2/1‑214 (MQ=255)                                                              cTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCACAGGAACTGCGCCATGCCGTAGCCCTTg                                                                                                                                                                                                                                    >  2:990237/1‑176 (MQ=255)                                                                    cATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCg                                                                                                                                                                 >  1:657006/1‑236 (MQ=255)                                                                      tCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCgg                                                                                                                                                                                                                                <  2:758778/172‑1 (MQ=255)                                                                         cccGACAGGCGATAGCCATCAGGCATACCGCCATTCCCCACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCg                                                                                                                                                                                                                                 <  2:740413/167‑1 (MQ=255)                                                                           cGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGaaa                                                                                                                                                           <  1:984572/235‑1 (MQ=255)                                                                                  cGATAGCCATCAGGCATACCGCCATTCCACCCCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAag                                                                                                                                                   <  1:233194/236‑1 (MQ=255)                                                                                         cATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                      <  1:106632/226‑1 (MQ=255)                                                                                          aTCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAg                                                                                                                                                                                                          >  1:859426/1‑173 (MQ=255)                                                                                            cAGGCATACCGCCATTCCACCCCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                      <  1:181038/223‑1 (MQ=255)                                                                                            cAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCt                                                                                                                                                                                                                                      <  1:342586/144‑1 (MQ=255)                                                                                             gggcATACCGCCATTCCACCCCCCCACCGAGCCGCGCTGCATGCGGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGatggctgaggtgttctacggcatgacc                                                                                                                                                                                                                  <  2:342395‑M1/162‑28 (MQ=255)                                                                                              ggCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAagc                                                                                                                                                  >  2:989892/1‑225 (MQ=255)                                                                                                 atcccGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATGGAGCAGCAGCGCACAGCAGAACCTATCCACCGGCAGGATGCGCTTGAGCTTGGCAGTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                      <  1:66222/215‑1 (MQ=255)                                                                                                      gCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCgg                                                                                                                                                                <  2:851066/203‑1 (MQ=255)                                                                                                            ccACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTa                                                                                                                                                                                                                                           >  1:489429/1‑123 (MQ=255)                                                                                                             cgcaccaccacCGAGCCGCGCTGCATGCTGAGATTGAGCAGCATCGCACAGCAGAACATACCCACCGGCAGGATGCGCTTGAGCTTGGCATTCTTCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                      <  1:307423/204‑1 (MQ=255)                                                                                                               tcccTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTaa                                                                                                                      <  2:739779/234‑1 (MQ=255)                                                                                                                   tCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATgc                                                                                                                  <  1:887333/236‑1 (MQ=255)                                                                                                                        cGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGc                                                                                                                                                                                                                          >  1:345373/1‑128 (MQ=255)                                                                                                                        cGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCgccggc                                                                                                                              >  1:995429/1‑219 (MQ=255)                                                                                                                         gctgtgcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAgg                                                                                                                                                                          >  1:216584/6‑174 (MQ=255)                                                                                                                             tgcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGt                                                                                                                                                                      >  1:94810/2‑174 (MQ=255)                                                                                                                             cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTTGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCCGTCATGCCGTA‑GAACACCTCTGCCATcggcatggc                                                                                                                                                                                             >  1:1028897‑M2/1‑142 (MQ=255)                                                                                                                             cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAgg                                                                                                                                                                          >  2:1088293/1‑170 (MQ=255)                                                                                                                             cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCCGCACACGCATGTCGCCGGCCGGGGGAAATtccgc                                                                                                               >  1:151360/1‑229 (MQ=255)                                                                                                                              gcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTg                                                                                                                                                              >  2:915806/1‑181 (MQ=255)                                                                                                                              gcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTg                                                                                                                                                              <  1:915809/181‑1 (MQ=255)                                                                                                                               cgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACg                                                                                                                                          >  2:1013048/1‑200 (MQ=255)                                                                                                                                  tGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTc                                                                                                   >  1:910589/1‑236 (MQ=255)                                                                                                                                          gagaTTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCa                                                                                                                                                     >  2:416807/1‑178 (MQ=255)                                                                                                                                                 agcagcagcGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCCTAGCCCTTGGCGGt                                                                                                                                                                                                                               >  2:118954/1‑98 (MQ=255)                                                                                                                                                 agcagcagcGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCAACTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                      <  1:425116/170‑1 (MQ=255)                                                                                                                                                    agcagcGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                       <  1:989895/214‑1 (MQ=255)                                                                                                                                                         cgcACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCgg                                                                                                                                                                                                                                >  1:912722/1‑89 (MQ=255)                                                                                                                                                         cgcACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCgg                                                                                                                                                                                                                                <  2:912719/89‑1 (MQ=255)                                                                                                                                                         cgcACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCGGACCGCGGCCGGCAGGcc                                                                                                                                                                        >  1:1017918/1‑144 (MQ=255)                                                                                                                                                              agcagAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGCACAgcgc                                                                                    >  1:211534/1‑223 (MQ=255)                                                                                                                                                                cagAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCgg                                                                                                                                                                <  2:710069/145‑1 (MQ=255)                                                                                                                                                                      atatCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGc                                                                >  1:767786/1‑235 (MQ=255)                                                                                                                                                                        atCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGt                                                                                                                                     <  2:445114/164‑1 (MQ=255)                                                                                                                                                                         tCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAAGCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTa                                                                                 <  2:753203/215‑1 (MQ=255)                                                                                                                                                                           ccccGGCAGGATGCGCTTGCGCTTGGCATCCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGa                                                                                           <  2:211532/201‑1 (MQ=255)                                                                                                                                                                           cACCGGCAGGGTGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGACGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                       <  2:1007561/191‑1 (MQ=255)                                                                                                                                                                           cACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCTGCCGGCAGGCCGTGACCg                                                                                                                                                                 >  2:599797/1‑133 (MQ=255)                                                                                                                                                                             ccGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGatggctgaggcgttctacggcatgaccgccaagggctacggcatggcgcagatcctgcgcga                                                                                                                                                                               >  1:575303‑M1/1‑56 (MQ=255)                                                                                                                                                                             ccGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCa                                                                                                                                                     >  2:365160/1‑143 (MQ=255)                                                                                                                                                                              cGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGa                                                                           <  2:449028/216‑1 (MQ=255)                                                                                                                                                                               ggCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcat                                                                                                                                                      >  2:357082‑M2/1‑92 (MQ=255)                                                                                                                                                                                gCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGATGGCTGAGGTGTTC‑TACGGCATGACCGCCAAGGGCTACGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTg                                                        >  2:1047050/1‑233 (MQ=25)                                                                                                                                                                                   ggATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGgcg                                                    >  2:357510/1‑234 (MQ=255)                                                                                                                                                                                    gATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAg                                                 <  1:357513/236‑1 (MQ=255)                                                                                                                                                                                     aTGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGatggctgaggtgttctacggcatgaccgccaagggctacggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgcc                                                                                                                                                 >  2:357082‑M1/1‑48 (MQ=255)                                                                                                                                                                                              aGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GCACACCTCAGCCATCGGCATGGCGCCGAccgcccc                                                                                                                                                                                 >  2:42181/1‑96 (MQ=255)                                                                                                                                                                                               gCTTGGCATTCATCACGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTg                                                                                            <  2:859423/182‑1 (MQ=255)                                                                                                                                                                                                        tCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGcc                             <  1:280857/236‑1 (MQ=255)                                                                                                                                                                                                             tcGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACGCCTCAGCCATcggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgccgg                                                                                                                                              >  1:575303‑M2/1‑62 (MQ=255)                                                                                                                                                                                                                 gcAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                       <  2:352572/153‑1 (MQ=255)                                                                                                                                                                                                                   aGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTa                                                                  >  1:611311/1‑188 (MQ=255)                                                                                                                                                                                                                   aGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGAATGGCGCCGACCGCCGCCGGCAGGCCGTGCCCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTa                                                                                                                       <  1:404493/135‑1 (MQ=255)                                                                                                                                                                                                                       tCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAac                 >  2:922572/1‑233 (MQ=255)                                                                                                                                                                                                                            gcCATGCCGatggcagaggtgttctacggcatgacggccaagggctacggcatggcgcagatcctgcgcgagatgaatgcaaagctcaagcgcatcctgccggtggatatgttctgctgtgcgctgctgctcaatctcagcatgcagcgcg                                                                                               >  1:1028897‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                  ccGatggctgaggtgttctacggcatgaccgccaagggctacggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgccggtggatatgttctgctgtgcgctgctgctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctaccgcctgtcggtggatggccaagtgctgtcgg                       >  2:376510‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                   cGatggctgaggtgttctacggcatgaccgccaagggctacggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgccggtggatatgttctgctgtgcgctgctgctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacct    >  1:494133‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                    gTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGAcc  <  2:360967/235‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                            TCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACC  >  AE015451/4953515‑4953976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.