New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4953742	59 (1.020)	3 (0.060)	3/320	NT	5.1%	coding (690/1692 nt)	PP_4363	Sensor histidine kinase/response regulator
	?	AE015451	= 4953780	57 (1.060)					coding (652/1692 nt)	PP_4363	Sensor histidine kinase/response regulator

AGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCGCTGCTCGTTAAGCAGGTGATGGT  >  AE015451/4953548‑4954001                                                                                                                                                                                                                                          |                                                                                                                                                                                                                              aGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcg                                                                                                                                                                                                                             >  1:494133‑M2/1‑233 (MQ=255)                    ccGACAGCACTTGGCCATCCACCGACAGGCGGTAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcgg                                                                                                                                                                                                                            >  2:376510‑M2/1‑214 (MQ=255)                                   cATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCg                                                                                                                                                                                          >  1:657006/1‑236 (MQ=255)                                          cGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGaaa                                                                                                                                                                                    <  1:984572/235‑1 (MQ=255)                                                 cGATAGCCATCAGGCATACCGCCATTCCACCCCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAag                                                                                                                                                                            <  1:233194/236‑1 (MQ=255)                                                        cATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                                               <  1:106632/226‑1 (MQ=255)                                                           cAGGCATACCGCCATTCCACCCCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                                               <  1:181038/223‑1 (MQ=255)                                                             ggCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAagc                                                                                                                                                                           >  2:989892/1‑225 (MQ=255)                                                                atcccGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATGGAGCAGCAGCGCACAGCAGAACCTATCCACCGGCAGGATGCGCTTGAGCTTGGCAGTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                                               <  1:66222/215‑1 (MQ=255)                                                                     gCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCgg                                                                                                                                                                                         <  2:851066/203‑1 (MQ=255)                                                                            cgcaccaccacCGAGCCGCGCTGCATGCTGAGATTGAGCAGCATCGCACAGCAGAACATACCCACCGGCAGGATGCGCTTGAGCTTGGCATTCTTCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                                               <  1:307423/204‑1 (MQ=255)                                                                              tcccTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTaa                                                                                                                                               <  2:739779/234‑1 (MQ=255)                                                                                  tCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATgc                                                                                                                                           <  1:887333/236‑1 (MQ=255)                                                                                       cGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCgccggc                                                                                                                                                       >  1:995429/1‑219 (MQ=255)                                                                                        gctgtgcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAgg                                                                                                                                                                                                   >  1:216584/6‑174 (MQ=255)                                                                                            tgcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGt                                                                                                                                                                                               >  1:94810/2‑174 (MQ=255)                                                                                            cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTTGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCCGTCATGCCGTA‑GAACACCTCTGCCATcggcatggc                                                                                                                                                                                                                      >  1:1028897‑M2/1‑142 (MQ=255)                                                                                            cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAgg                                                                                                                                                                                                   >  2:1088293/1‑170 (MQ=255)                                                                                            cgcgCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCCGCACACGCATGTCGCCGGCCGGGGGAAATtccgc                                                                                                                                        >  1:151360/1‑229 (MQ=255)                                                                                             gcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTg                                                                                                                                                                                       >  2:915806/1‑181 (MQ=255)                                                                                             gcgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTg                                                                                                                                                                                       <  1:915809/181‑1 (MQ=255)                                                                                              cgcTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACg                                                                                                                                                                   >  2:1013048/1‑200 (MQ=255)                                                                                                 tGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTc                                                                                                                            >  1:910589/1‑236 (MQ=255)                                                                                                         gagaTTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCa                                                                                                                                                                              >  2:416807/1‑178 (MQ=255)                                                                                                                agcagcagcGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCAACTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGcc                                                                                                                                                                               <  1:425116/170‑1 (MQ=255)                                                                                                                   agcagcGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                                                <  1:989895/214‑1 (MQ=255)                                                                                                                        cgcACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCGGACCGCGGCCGGCAGGcc                                                                                                                                                                                                 >  1:1017918/1‑144 (MQ=255)                                                                                                                             agcagAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGCACAgcgc                                                                                                             >  1:211534/1‑223 (MQ=255)                                                                                                                               cagAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCgg                                                                                                                                                                                         <  2:710069/145‑1 (MQ=255)                                                                                                                                     atatCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGc                                                                                         >  1:767786/1‑235 (MQ=255)                                                                                                                                       atCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGt                                                                                                                                                              <  2:445114/164‑1 (MQ=255)                                                                                                                                        tCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAAGCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTa                                                                                                          <  2:753203/215‑1 (MQ=255)                                                                                                                                          ccccGGCAGGATGCGCTTGCGCTTGGCATCCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGa                                                                                                                    <  2:211532/201‑1 (MQ=255)                                                                                                                                          cACCGGCAGGGTGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGACGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                                                <  2:1007561/191‑1 (MQ=255)                                                                                                                                          cACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCTGCCGGCAGGCCGTGACCg                                                                                                                                                                                          >  2:599797/1‑133 (MQ=255)                                                                                                                                            ccGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCa                                                                                                                                                                              >  2:365160/1‑143 (MQ=255)                                                                                                                                             cGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGa                                                                                                    <  2:449028/216‑1 (MQ=255)                                                                                                                                              ggCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATcggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcat                                                                                                                                                                               >  2:357082‑M2/1‑92 (MQ=255)                                                                                                                                               gCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGATGGCTGAGGTGTTC‑TACGGCATGACCGCCAAGGGCTACGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTg                                                                                 >  2:1047050/1‑233 (MQ=25)                                                                                                                                                  ggATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGgcg                                                                             >  2:357510/1‑234 (MQ=255)                                                                                                                                                   gATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAg                                                                          <  1:357513/236‑1 (MQ=255)                                                                                                                                                             aGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GCACACCTCAGCCATCGGCATGGCGCCGAccgcccc                                                                                                                                                                                                          >  2:42181/1‑96 (MQ=255)                                                                                                                                                              gCTTGGCATTCATCACGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTg                                                                                                                     <  2:859423/182‑1 (MQ=255)                                                                                                                                                                       tCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGcc                                                      <  1:280857/236‑1 (MQ=255)                                                                                                                                                                            tcGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACGCCTCAGCCATcggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgccgg                                                                                                                                                                       >  1:575303‑M2/1‑62 (MQ=255)                                                                                                                                                                                gcAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCa                                                                                                                                <  2:352572/153‑1 (MQ=255)                                                                                                                                                                                  aGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTa                                                                                           >  1:611311/1‑188 (MQ=255)                                                                                                                                                                                  aGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGAATGGCGCCGACCGCCGCCGGCAGGCCGTGCCCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTa                                                                                                                                                <  1:404493/135‑1 (MQ=255)                                                                                                                                                                                      tCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAac                                          >  2:922572/1‑233 (MQ=255)                                                                                                                                                                                                   gTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGAcc                           <  2:360967/235‑1 (MQ=255)                                                                                                                                                                                                            ggCGGACATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGc                                                                                                                                                                                                  >  2:1021110/1‑59 (MQ=255)                                                                                                                                                                                                             gCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAgcgc                                                                                                             <  2:685336/143‑1 (MQ=255)                                                                                                                                                                                                             gCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCGCTGCTCGtt                <  1:922575/236‑1 (MQ=255)                                                                                                                                                                                                              cGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGGAAAGGCCGCCAg                                                                                                                                     >  2:342538/1‑118 (MQ=255)                                                                                                                                                                                                               ggTCATGCCGTA‑GAACACCTCAGCCATcggcatggcgcagatcctgcgcgagatgaatgccaagctcaagcgcatcctgccggtggatatgttctgctgtgcgctgctgctcaatctccgcatgcagcgcggctcggtgggggggtggaatggcggtatgccc                                                                                       <  2:342395‑M2/163‑137 (MQ=255)                                                                                                                                                                                                               ggTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGc                                                                                         >  2:438344/1‑161 (MQ=255)                                                                                                                                                                                                                 tCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCgctgc                     <  1:782908/227‑1 (MQ=255)                                                                                                                                                                                                                    tGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTg                                 <  1:1088296/212‑1 (MQ=255)                                                                                                                                                                                                                            gAACACCGCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCTATTGAACAGCTCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCGCTGGTCGTTAAGCAggtgatgat  <  1:566088/236‑3 (MQ=255)                                                                                                                                                                                                                               cacCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGACGCCCGCATCAGGTCGCCATTGGACAgcgc                                                                                                             >  2:163146/1‑126 (MQ=255)                                                                                                                                                                                                                                 ccTCAGCCATCGCCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGAccc                          <  2:607917/207‑1 (MQ=255)                                                                                                                                                                                                                                     aGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAg                                                                          <  2:71524/155‑1 (MQ=255)                                                                                                                                                                                                                                     aGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAg                                                                          >  1:71526/1‑155 (MQ=255)                                                                                                                                                                                                                                       ccATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCGCTGCTCGTTAAGCAggtg       <  2:910387/220‑1 (MQ=255)                                                                                                                                                                                                                                         aTCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCGAGCAGCACACGCATGTAGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAg                                                                          <  2:98520/151‑1 (MQ=255)                                                                                                                                                                                                                                          tCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCgctg                      >  1:19834/1‑202 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                              AGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAGCAGCAGCGCACAGCAGAACATATCCACCGGCAGGATGCGCTTGAGCTTGGCATTCATCTCGCGCAGGATCTGCGCCATGCCGTAGCCCTTGGCGGTCATGCCGTA‑GAACACCTCAGCCATCGGCATGGCGCCGACCGCCGCCGGCAGGCCGTGACCGGTGAAATCGCCAAGCAGCACACGCATGTCGCCGGCCGGGGTAAATGCCGCCAGCATCAGGTCGCCATTGAACAGCGCGTAAGGCGATTGCAGGTAGCGAATGTTGGGCGCAGAAAGGCAACCAGAGTGGGCCACCTTGTCGAACACCGCCTTGGCGACCCGCTGCTCGTTAAGCAGGTGATGGT  >  AE015451/4953548‑4954001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.