New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4961181	45 (0.780)	4 (0.070)	3/326	NT	8.7%	coding (1257/1356 nt)	atoC	two component system AtoC DNA‑binding transcriptional activator
	?	AE015451	= 4961188	41 (0.750)					coding (1250/1356 nt)	atoC	two component system AtoC DNA‑binding transcriptional activator

GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4960942‑4961181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgccGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTTTGACGTCGAGGCCAGCCTGTTCGGCTGACTGGCAAATCATCTGCAACTGGCGCGGACCTCTGTGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCA  <  AE015451/4961188‑4960986                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGGC                                                                                                                                                                                                                 >  1:356732/1‑236   CCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCCGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGGC                                                                                                                                                                                                                 >  2:373754/1‑234                                                          AAGACCTGGGGCCGCTTCGCGCCCCATCCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGG                                                                                                                                                                                                                  <  2:1014420/178‑1                                                               CTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGGCCGCCGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACG                                                                                                                                                                    <  1:359697/219‑1                                                                                                                                                                      TCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGCTCCCCAGGCGTTCGGCCGCCGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTT                                                                                                                              >  1:315038/1‑154                                                                                                                                                                                                               CGTCCGCGGACTGATCCCCAGGCGTTCGGCCGCCGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTTTGACGTCGAGGTCAGCCTGTTCGGCTG                                                                                                   >  2:788736/1‑140                                                                                                                                                                                                               CGTCCGCGGACTGATCCCCAGGCGTTCGGCCGCCGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATG                                                                                                                                            >  2:814741/1‑99                                                                                                                                                                                                                                         CGGCCGCCGCAAAGAGGCGGCCGACCGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTTTGACGTCGAGGCCAGCCTGTTCGGCTGACTGGCAAATCATCTGCAACTGGCGCGGACCTCTGTGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCA  <  1:224593/211‑1                                                                                                                                                                                                                                            CCGCCGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTTTGACGTCGAGGCCAGCCTGTTCGGCTGACTGGCAAATCATCTGCAACTGGCGCGGACCTCTGTGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTT               <  1:266061/195‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGGCATCGCGCATCTGCGCCAGCTTGTAGCGCAACGTCCGCGGACTGATCCCCAGGCGTTCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4960942‑4961181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgccGCAAAGAGGCGGCCGAACGCCTGGGGATCAGTCCGCGGACGTTGCGCTACAAGCTGGCGCAGATGCGCGATGCCGGGTTTGACGTCGAGGCCAGCCTGTTCGGCTGACTGGCAAATCATCTGCAACTGGCGCGGACCTCTGTGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCA  <  AE015451/4961188‑4960986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.