| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5101071 | 42 (0.730) | 4 (0.070) | 4/334 | NT | 8.9% | coding (556/1560 nt) | phhR | sigma‑54 dependent transcriptional regulator |
| ? | AE015451 | = 5101092 | 41 (0.730) | coding (535/1560 nt) | phhR | sigma‑54 dependent transcriptional regulator | |||||
CGCAGTTGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5100834‑5101071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGTGCGTGAAGCGCGGCGCATGGCGCCGCTGGATGCACCGTTGCTGATCGAGGGCGAAACCGGAACCGGCAAGGAGTTGCTGGCGCGTGCCTGCCACCTGGCCAGCCCGCGTGGGC < AE015451/5101092‑5100861 CGCAGTTGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCG < 1:649434/236‑1CGCAGTTGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCG < 1:807120/236‑1 GCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGC > 1:494425/1‑220 CGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCG < 2:781055/133‑1 GTGCATCCAGCGGCGCCATGCGCCGCGCTTCGCGCACCCCGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCG < 2:191994/131‑1 GCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAGGC > 1:1015878/1‑153 GTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGTGC > 1:462206/1‑181 GCGCACATTGTAGATACGCTCGCCGATCCGGCCGGCGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGTGCGTGAAGCGCGGCGCATGGCGCCGCTGGATGCACCGTTGCTGATCGAGGGCGAAACCGGAACCGGCAAG > 1:501617/1‑225 CGATCCGGTCGGCGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGAGCGTGAAGCGCG > 1:255014/1‑144 CGGCGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGTGCGTGAAGCGCGGCGCATGGCGCCGCTGGATGCACCGTTGCTGATCGAGGGCGAAACCGGAACCGGCAAGGAGTTGCTGGCGCGTGCCTGCCACCTGGCCAGCCCGCGTGGGC < 1:910458/236‑1 CGCAGTTGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5100834‑5101071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGCGGTGCTTACCCTGCACCGTGCCGACCGGATCGGCGAGCGTATCTACAATGTGCGCAAGCAAGAGCTGCGTGGCTTCGACAGCATCTTCCAGAGCTCGCGGGTGATGGCTGCCGTGGTGCGTGAAGCGCGGCGCATGGCGCCGCTGGATGCACCGTTGCTGATCGAGGGCGAAACCGGAACCGGCAAGGAGTTGCTGGCGCGTGCCTGCCACCTGGCCAGCCCGCGTGGGC < AE015451/5101092‑5100861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |