New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5101071	42 (0.730)	4 (0.070)	4/334	NT	8.9%	coding (556/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator
	?	AE015451	= 5101092	41 (0.730)					coding (535/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator

TGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGG  >  AE015451/5100840‑5101303                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         tGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      <  1:676233/236‑1 (MQ=255)             gcggcgACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGC                                                                                                                                                                                                                                          >  1:494425‑M1/1‑220 (MQ=255)                      gCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccg                                                                                                                                                                                                                 <  1:910458‑M2/236‑5 (MQ=255)                           cgcgGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      <  2:754619/210‑1 (MQ=255)                           cgcgGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTaa                                                                                                                                                                                                                            <  1:484248/220‑1 (MQ=255)                                gCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      <  2:811947/205‑1 (MQ=255)                                        ggTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGt                                                                                                                                                                                                 <  1:941230/234‑1 (MQ=255)                                                gcaCGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAgcg                                                                                                                                                                                                          <  2:696786/217‑1 (MQ=255)                                                 caCGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCAc                                                                                                                                                                                                                        >  2:858768/1‑202 (MQ=255)                                                      gcCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCg                                                                                                                                                                                                     >  1:994562/1‑216 (MQ=255)                                                      gcCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTg                                                                                                                                                                                 <  1:750733/236‑1 (MQ=255)                                                      gcCAGCAACTCCGTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTg                                                                                                                                                                                 <  1:139871/236‑1 (MQ=255)                                                                 cTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccggccggatcggcgagcgtatctacaatgtgcgc                                                                                                                                                                                 >  1:501617‑M2/1‑189 (MQ=255)                                                                     ccggttccggttTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCAt                                                                                                                                                                                              >  2:419788/1‑208 (MQ=255)                                                                      cggttccggttTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCg                                                                                                                                                                            <  1:683166/225‑1 (MQ=255)                                                                                                   ggTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      <  2:614101/138‑1 (MQ=255)                                                                                                          ccAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCgg                                                                                                                                                                                                                <  1:313481/153‑1 (MQ=255)                                                                                                                    cATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGCTGCGCAAGCCGTTGATgc                                                                                                                   >  1:270954/1‑236 (MQ=255)                                                                                                                        cgccgcGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAacac                                                                                                                                                      <  2:776800/197‑1 (MQ=255)                                                                                                                           cgcgCTTCACGCTCCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcg                                                                                                                                                                                                        >  1:255014‑M2/1‑131 (MQ=255)                                                                                                                              gcTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGT‑AGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACttgttg                                                                                                        <  1:365976/236‑1 (MQ=255)                                                                                                                                ttCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTgg                                                                                                       >  1:432521/1‑236 (MQ=255)                                                                                                                                  cgcGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATgcg                                                                                                                  <  1:851965/221‑1 (MQ=255)                                                                                                                                     gCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgac                                                                                                                                                         >  1:462206‑M2/1‑121 (MQ=255)                                                                                                                                         cacGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGccc                                                                                                    <  1:20133/230‑1 (MQ=255)                                                                                                                                           cGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCaa                                                                                             >  1:1058795/1‑235 (MQ=255)                                                                                                                                            ggCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGc                                                                                                                                                                                                               >  2:284032/1‑120 (MQ=255)                                                                                                                                             gCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCgcggtgcttaccctgcaccgtgccgaccggatcggcgagcgtatctacaatgtgcgcaggc                                                                                                                                                                             >  1:1015878‑M1/1‑92 (MQ=255)                                                                                                                                                gCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACt                                                                                                             <  1:591331/214‑1 (MQ=255)                                                                                                                                                        ccGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGa                                                                               >  1:579738/1‑236 (MQ=255)                                                                                                                                                                             gTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCgcggtgcttaccctgcaccgtgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgccgtggtgc                                                                                                                 >  1:462206‑M1/1‑60 (MQ=255)                                                                                                                                                                                     cACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCAt                                                   <  1:602481/235‑1 (MQ=255)                                                                                                                                                                                         cAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCg                                                                                        >  2:90735/1‑194 (MQ=255)                                                                                                                                                                                           gCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      >  2:118355/1‑50 (MQ=255)                                                                                                                                                                                           gCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcg                                                             >  2:998981/1‑219 (MQ=255)                                                                                                                                                                                                 gcctgcGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgc                                                                                                                         >  1:1015878‑M2/1‑61 (MQ=255)                                                                                                                                                                                                     gcgcACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      >  1:877355/1‑40 (MQ=255)                                                                                                                                                                                                     gcgcACATTGTAGATACGCTCGCCGATCCGGTCGGCACgg                                                                                                                                                                                                                                      <  2:877352/40‑1 (MQ=255)                                                                                                                                                                                                     gcgcACATTGTAGATACGCTCGCCGATCCGGCCGGCgcggtgcttaccctgcaccgtgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgccgtggtgcgtgaagcgcggcgcatggcgccgctggatgcaccgttgctgatcgagggcgaaaccggaaccggcaag                                             >  1:501617‑M1/1‑36 (MQ=255)                                                                                                                                                                                                       gcACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCaa                                  <  2:910455/234‑1 (MQ=255)                                                                                                                                                                                                         acaTTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCCGAAACACAGCACctttga                                                                                                                                           >  2:144732/1‑127 (MQ=255)                                                                                                                                                                                                               tAGATCCGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGcc                                                                                                     <  1:280072/159‑1 (MQ=255)                                                                                                                                                                                                                 gATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAAc                                 <  1:800198/225‑1 (MQ=255)                                                                                                                                                                                                                      gCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCg                                              <  1:90737/207‑1 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATg                                                                                                                    >  2:17239/1‑135 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGATTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACtc               >  1:617674/1‑235 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGaa                                                                                     >  2:434087/1‑166 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCaa                  >  1:473449/1‑233 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAAc                 >  1:848308/1‑234 (MQ=255)                                                                                                                                                                                                                        tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCCCGCCGGCCCGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCTGTGCGATATCGGCCAGAAACACATTACcttt                                                                                                                                             >  2:971613/1‑110 (MQ=255)                                                                                                                                                                                                                          gCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTaac                                                                >  2:295238/1‑183 (MQ=255)                                                                                                                                                                                                                            cgctCCGGTCGGCACGGTGCAGGGTAGGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATc                                                                                 <  1:812130/163‑1 (MQ=255)                                                                                                                                                                                                                            cGATCCGGTCGGCgcggtgcttaccctgcaccgtgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgccgtggagcgtgaagcgcg                                                                                                       >  1:255014‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                            cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcgc                                                            >  1:413562/1‑187 (MQ=255)                                                                                                                                                                                                                            cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTgcgcc           >  1:112468/1‑235 (MQ=255)                                                                                                                                                                                                                            cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTgc              >  1:963038/1‑233 (MQ=255)                                                                                                                                                                                                                              aTCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATc                                                                                 <  2:219964/164‑1 (MQ=255)                                                                                                                                                                                                                                ctggTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTg       >  1:1004255/3‑236 (MQ=255)                                                                                                                                                                                                                                 cGGGCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCCCCTTTGCCTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcgc                                                            <  2:169525/182‑1 (MQ=255)                                                                                                                                                                                                                                     cGGCgcggtgcttaccctgcaccgtgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgccgtggtgcgtgaagcgcggcgcatggcgccgctggatgcaccgttgctgatcgagggcgaaaccggaaccggcaaggagttgctggcgcgtgcctgccacctggccagcccgcgtgggc  <  1:910458‑M1/236‑233 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         TGAGCGCCATCAGCGGCGACTGCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGG  >  AE015451/5100840‑5101303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.