New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5101071	42 (0.730)	4 (0.070)	4/334	NT	8.9%	coding (556/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator
	?	AE015451	= 5101092	41 (0.730)					coding (535/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator

GCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCG  >  AE015451/5100861‑5101324                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         gCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccg                                                                                                                                                                                                                                      <  1:910458‑M2/236‑5 (MQ=255)                   ggTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGt                                                                                                                                                                                                                      <  1:941230/234‑1 (MQ=255)                           gcaCGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAgcg                                                                                                                                                                                                                               <  2:696786/217‑1 (MQ=255)                                 gcCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCg                                                                                                                                                                                                                          >  1:994562/1‑216 (MQ=255)                                 gcCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTg                                                                                                                                                                                                      <  1:750733/236‑1 (MQ=255)                                 gcCAGCAACTCCGTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTg                                                                                                                                                                                                      <  1:139871/236‑1 (MQ=255)                                            cTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccggccggatcggcgagcgtatctacaatgtgcgc                                                                                                                                                                                                      >  1:501617‑M2/1‑189 (MQ=255)                                                ccggttccggttTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCAt                                                                                                                                                                                                                   >  2:419788/1‑208 (MQ=255)                                                 cggttccggttTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCg                                                                                                                                                                                                 <  1:683166/225‑1 (MQ=255)                                                                                     ccAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCgg                                                                                                                                                                                                                                     <  1:313481/153‑1 (MQ=255)                                                                                               cATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGCTGCGCAAGCCGTTGATgc                                                                                                                                        >  1:270954/1‑236 (MQ=255)                                                                                                   cgccgcGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAacac                                                                                                                                                                           <  2:776800/197‑1 (MQ=255)                                                                                                      cgcgCTTCACGCTCCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcg                                                                                                                                                                                                                             >  1:255014‑M2/1‑131 (MQ=255)                                                                                                         gcTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGT‑AGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACttgttg                                                                                                                             <  1:365976/236‑1 (MQ=255)                                                                                                           ttCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTgg                                                                                                                            >  1:432521/1‑236 (MQ=255)                                                                                                             cgcGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATgcg                                                                                                                                       <  1:851965/221‑1 (MQ=255)                                                                                                                gCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgac                                                                                                                                                                              >  1:462206‑M2/1‑121 (MQ=255)                                                                                                                    cacGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGccc                                                                                                                         <  1:20133/230‑1 (MQ=255)                                                                                                                      cGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCaa                                                                                                                  >  1:1058795/1‑235 (MQ=255)                                                                                                                       ggCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGc                                                                                                                                                                                                                                    >  2:284032/1‑120 (MQ=255)                                                                                                                           gCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACt                                                                                                                                  <  1:591331/214‑1 (MQ=255)                                                                                                                                   ccGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGa                                                                                                    >  1:579738/1‑236 (MQ=255)                                                                                                                                                                cACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCAt                                                                        <  1:602481/235‑1 (MQ=255)                                                                                                                                                                    cAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCg                                                                                                             >  2:90735/1‑194 (MQ=255)                                                                                                                                                                      gCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcg                                                                                  >  2:998981/1‑219 (MQ=255)                                                                                                                                                                            gcctgcGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCgccgaccggatcggcgagcgtatctacaatgtgcgcaagcaagagctgcgtggcttcgacagcatcttccagagctcgcgggtgatggctgc                                                                                                                                              >  1:1015878‑M2/1‑61 (MQ=255)                                                                                                                                                                                  gcACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCaa                                                       <  2:910455/234‑1 (MQ=255)                                                                                                                                                                                    acaTTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCCGAAACACAGCACctttga                                                                                                                                                                >  2:144732/1‑127 (MQ=255)                                                                                                                                                                                          tAGATCCGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGcc                                                                                                                          <  1:280072/159‑1 (MQ=255)                                                                                                                                                                                            gATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAAc                                                      <  1:800198/225‑1 (MQ=255)                                                                                                                                                                                                 gCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCg                                                                   <  1:90737/207‑1 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATg                                                                                                                                         >  2:17239/1‑135 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGATTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACtc                                    >  1:617674/1‑235 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGaa                                                                                                          >  2:434087/1‑166 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCaa                                       >  1:473449/1‑233 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAAc                                      >  1:848308/1‑234 (MQ=255)                                                                                                                                                                                                   tCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCCCGCCGGCCCGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCTGTGCGATATCGGCCAGAAACACATTACcttt                                                                                                                                                                  >  2:971613/1‑110 (MQ=255)                                                                                                                                                                                                     gCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTaac                                                                                     >  2:295238/1‑183 (MQ=255)                                                                                                                                                                                                       cgctCCGGTCGGCACGGTGCAGGGTAGGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATc                                                                                                      <  1:812130/163‑1 (MQ=255)                                                                                                                                                                                                       cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcgc                                                                                 >  1:413562/1‑187 (MQ=255)                                                                                                                                                                                                       cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTgcgcc                                >  1:112468/1‑235 (MQ=255)                                                                                                                                                                                                       cGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTgc                                   >  1:963038/1‑233 (MQ=255)                                                                                                                                                                                                         aTCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATc                                                                                                      <  2:219964/164‑1 (MQ=255)                                                                                                                                                                                                           ctggTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTg                            >  1:1004255/3‑236 (MQ=255)                                                                                                                                                                                                            cGGGCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCCCCTTTGCCTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAgcgcgc                                                                                 <  2:169525/182‑1 (MQ=255)                                                                                                                                                                                                                           aGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGCAGTCTTCTACGTAGCGCGCCAGCgg                                                                           >  2:82518/1‑173 (MQ=255)                                                                                                                                                                                                                           aGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATg                                                                       <  2:994559/177‑1 (MQ=255)                                                                                                                                                                                                                                aaGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGAt         >  2:654117/1‑234 (MQ=255)                                                                                                                                                                                                                                     ccGCGCCGGCCAGCGCCTCTCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTGGTTGGCCCGCGCCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTgccg  >  1:662040/1‑236 (MQ=255)                                                                                                                                                                                                                                     ccGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCa                                                                               >  2:478779/1‑159 (MQ=255)                                                                                                                                                                                                                                     ccGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCAGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGCTGCTgccg  >  1:129727/1‑236 (MQ=255)                                                                                                                                                                                                                                     ccGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGCGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGCTGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTgccc                                 >  1:283675/1‑203 (MQ=255)                                                                                                                                                                                                                                      cgcgCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCGGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTGTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAAc                                                      <  1:33145/183‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         GCCCACGCGGGCTGGCCAGGTGGCAGGCACGCGCCAGCAACTCCTTGCCGGTTCCGGTTTCGCCCTCGATCAGCAACGGTGCATCCAGCGGCGCCATGCGCCGCGCTTCACGCACCACGGCAGCCATCACCCGCGAGCTCTGGAAGATGCTGTCGAAGCCACGCAGCTCTTGCTTGCGCACATTGTAGATACGCTCGCCGATCCGGTCGGCACGGTGCAGGGTAAGCACCGCGCCGGCCAGCGCCTCGCTGTCATCGTGTTCGGACTGCAGCGGTGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCG  >  AE015451/5100861‑5101324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.