New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5434211	37 (0.640)	3 (0.050)	3/330	NT	7.0%	coding (1053/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	AE015451	= 5434277	44 (0.790)					coding (987/2529 nt)	hrpB	ATP‑dependent helicase HrpB

GTGCGCGATGCGTGGGTGAGCCGGCAGTTCGGCCATGGCCTGGCCATGTTCGCTGAGGGTGTCGCGGCTGCCCGGCCGGAAGGCGCTGAGTCGCGCCAACAGGTCCTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5433974‑5434211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgT‑‑‑GCCGGCC‑‑‑‑‑‑‑GCCTGGAACCCGGCGTGTGCTACCGCCTTTGGTCCGAGGCCCAGCATGACCAGCTGGCCGC  <  AE015451/5434277‑5434209                                                                                                                                                                                                                                                                                                                               GTGCGCGATGCGTGGGTGAGCCGGCAGTTCGGCCATGGCCTGGCCATGTTCGCTGAGGGTGTCGCGGCTGCCCGGCCGGAAGGCGCTGAGTCGCGCCAACAGGTCCTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCAT                                                                                      >  2:641812/1‑233                                                                                            CGCGCCAACAGGTCCTGTGCCTCGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCAT                                                                                      >  1:592877/1‑142                                                                                                                       TACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTGGAACCCGGCGTGTGCTACCGCCTTTGGTCCGAGGCCCAGCATGACCAGCTGGCCGC  <  2:923448/199‑1                                                                                                                                 CTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGTCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGT‑‑‑GCCGGCC‑‑‑‑‑‑‑GCCTGGAACCCGGCGTGTGCTACCGC                                     >  1:244582/1‑144                                                                                                                                 CTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGTCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGT‑‑‑GCCGGCC‑‑‑‑‑‑‑GCCTGGAACCCGGCGTGTGCTACCGC                                     <  2:244579/144‑1                                                                                                                                                                                                                                                                                                                               GTGCGCGATGCGTGGGTGAGCCGGCAGTTCGGCCATGGCCTGGCCATGTTCGCTGAGGGTGTCGCGGCTGCCCGGCCGGAAGGCGCTGAGTCGCGCCAACAGGTCCTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5433974‑5434211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgT‑‑‑GCCGGCC‑‑‑‑‑‑‑GCCTGGAACCCGGCGTGTGCTACCGCCTTTGGTCCGAGGCCCAGCATGACCAGCTGGCCGC  <  AE015451/5434277‑5434209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.