New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5434211	37 (0.640)	3 (0.050)	3/330	NT	7.0%	coding (1053/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	AE015451	= 5434277	44 (0.790)					coding (987/2529 nt)	hrpB	ATP‑dependent helicase HrpB

CTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCCGGCGGGTCGATAGCGGCGCGCTGGGCATTGAGGTCGAGCTCGCCATG  >  AE015451/5434079‑5434510                                                                                                                                                                                                                 |                                                                                                                                                                                                                                           cTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAAt                                                                                                                                                                                                         <  2:373121/234‑1 (MQ=255)       cTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGt                                                                                                                                                                                                                           >  2:22695/1‑210 (MQ=255)        ggggCGTACGCTGCAGCTGGCGGCTGGGCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATgc                                                                                                                                                                                                       <  1:1057319/228‑1 (MQ=255)           gCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGCCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTc                                                                                                                                                                                             >  1:570495/1‑236 (MQ=255)                 gCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGCGGCACTGGCGCGGGAAATGCGCTg                                                                                                                                                                                                   >  1:836297/1‑224 (MQ=255)                   tGCAGCTGGCGGCGGGTCGAGCCAGCGCACCTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACt                                                                                                                                                                                                                     <  1:159354/204‑1 (MQ=255)                        cTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCAt                                                                                                                                                                                 >  1:1007153/1‑235 (MQ=255)                           gcggcTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCt                                                                                                                                                                                                                               <  1:1057554/186‑1 (MQ=255)                                      aGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAgc                                                                                                                                                                                                                                    <  1:95081/170‑1 (MQ=255)                                           gcgcACCTGCTCGGGGGTTACACCCCAGCGCGCCAACGGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAgcgcgc                                                                                                                                                                                                                                <  2:651019/169‑1 (MQ=255)                                                    cTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGc                                                                                                                                                        <  2:1007150/232‑1 (MQ=255)                                                     tCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑g                                                                                                                                                  <  1:60589/236‑1 (MQ=255)                                                      cGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑g                                                                                                                                                  <  1:743878/235‑1 (MQ=255)                                                               cacCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAgcgcg                                                                                                                                                                                                                                 <  2:715814/148‑1 (MQ=255)                                                                  cccAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGCCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCt                                                                                                                                        <  2:570492/233‑1 (MQ=255)                                                                        gcgcCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGAt                                                                                                                                >  1:649957/1‑235 (MQ=255)                                                                            cAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGc                                                                                                                                                        <  1:22696/208‑1 (MQ=255)                                                                            cAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGGAGCACACGCCGGGTGCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCAcc                                                                                                                                                                                                                     >  2:160998/1‑146 (MQ=255)                                                                                tGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCa                                                                                                                                             <  2:800238/214‑1 (MQ=255)                                                                                           cccGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCa                                                                                                                                             <  2:821951/203‑1 (MQ=255)                                                                                           cccGGCCAGGTCGGCCGGGAGAATCTCGGCACTGCCAGGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑g                                                                                                                                                  <  1:351862/198‑1 (MQ=255)                                                                                                   ggTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGa                                                                                                                                                                                                            >  2:296324/1‑133 (MQ=255)                                                                                                    gTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCAcgc                                                                                                                        <  2:518712/215‑1 (MQ=255)                                                                                                       ggCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTg                                                                                                                                                                                                                              >  2:25741/1‑111 (MQ=255)                                                                                                            ggAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGtct                                                                                             >  1:442397/1‑234 (MQ=255)                                                                                                                 aTCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAg                                                                                                     >  1:1011641/1‑221 (MQ=255)                                                                                                                 aTCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAg                                                                                                     <  2:1011638/221‑1 (MQ=255)                                                                                                                      ggCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCCGGGGCCAGGCCTGCGt                                                                                                                                    >  2:907127/1‑186 (MQ=255)                                                                                                                          cTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACAGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTtg                                                                                  <  2:575103/231‑1 (MQ=255)                                                                                                                                tGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAg                                                                                          <  1:621421/217‑1 (MQ=255)                                                                                                                                   gcggcCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGCCCAGCATGACCAGCTGGCcgcccatggcagtgccgagattctccaggccgacctggccgggctggccctgcagttggcgcgctggggtgtaacccccgagcagttgcgctggctcgaccagccgccagctgcagcgta                                                                                                                    <  2:923448‑M2/199‑121 (MQ=255)                                                                                                                                       ccAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTtg                                                                                  <  1:1079877/218‑1 (MQ=255)                                                                                                                                                    cTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCa                                                                                                                     >  2:1079874/1‑170 (MQ=255)                                                                                                                                                            cGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGgt                                                                                                                                                                                                <  1:588363/88‑1 (MQ=255)                                                                                                                                                            cGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGgt                                                                                                                                                                                                >  2:588360/1‑88 (MQ=255)                                                                                                                                                            cGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCCCGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCcggcg                                             >  2:704092/1‑234 (MQ=255)                                                                                                                                                            cGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTgc                                                               >  2:756039/1‑216 (MQ=255)                                                                                                                                                              gACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCcgg                                               <  1:389567/230‑1 (MQ=255)                                                                                                                                                               aCCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCgg                                                                                                                                                                                      >  2:299272/1‑95 (MQ=255)                                                                                                                                                               aCCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCa                                                                           <  1:1042422/201‑1 (MQ=255)                                                                                                                                                               aCCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCa                                                                           >  2:1042419/1‑201 (MQ=255)                                                                                                                                                                      gCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑Acgcccatggcagtgccgagattctccaggccgacctggccggactggccctgcagttggcgcgctggggtgtaacccccgagcagttgcgctggctcgaccagccgccag                                                                                                                              <  2:244579‑M2/144‑111 (MQ=255)                                                                                                                                                                      gCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑Acgcccatggcagtgccgagattctccaggccgacctggccggactggccctgcagttggcgcgctggggtgtaacccccgagcagttgcgctggctcgaccagccgccag                                                                                                                              >  1:244582‑M2/1‑34 (MQ=255)                                                                                                                                                                      gCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAgcgcg                                                                                                                                                                                                                                 <  2:115413/45‑1 (MQ=255)                                                                                                                                                                            gCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGGTGGTGGCCAGcaccac                                                                    >  1:106017/1‑195 (MQ=255)                                                                                                                                                                                     gggTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATc                                                                                                              >  2:564790/1‑144 (MQ=255)                                                                                                                                                                                          ccAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑AAGCCAAGCGCGCTGGGTGGCACTGGCGGGGGAAATGCGCCGGGTGTCCAGGCGGGTCATGCCGCTGCCggg                                                                                                                                                                     >  2:1037642/1‑85 (MQ=255)                                                                                                                                                                                               c‑‑‑‑‑‑‑ggccggc‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCCGGCGGGTCGATAGCGGCGCGCTGGGCATTGAGGTCGAGCt         >  1:456921/1‑235 (MQ=255)                                                                                                                                                                                                        gccggc‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATg                                                                                     <  1:894671/157‑1 (MQ=255)                                                                                                                                                                                                        gccggc‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATg                                                                                     >  2:894668/1‑157 (MQ=255)                                                                                                                                                                                                           ggc‑‑‑ACGCCCAGCGCGCTGGGTGGCCCTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCCGCCGGGGTCGAAGCGCGGCACCC‑GGGCCa                                                                                                                                             >  2:56211/1‑98 (MQ=255)                                                                                                                                                                                                            gc‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCCGGCGGGTCGATAGCGGCGCGCTGGGCATTGAGGTCGAGCTCGCCATg  >  1:585471/1‑236 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                           CTGTGCCTGGGCGTACGCTGCAGCTGGCGGCTGGTCGAGCCAGCGCAACTGCTCGGGGGTTACACCCCAGCGCGCCAACTGCAGGGCCAGCCCGGCCAGGTCGGCCTGGAGAATCTCGGCACTGCCATGGGCGGCCAGCTGGTCATGCTGGGCCTCGGACCAAAGGCGGTAGCACACGCCGGGTTCCAGGC‑‑‑‑‑‑‑GGCCGGC‑‑‑ACGCCCAGCGCGCTGGGTGGCACTGGCGCGGGAAATGCGCTGGGTGTCCAGGCGGGTCATGCCGCTGCCGGGGTCGAAGCGCGGCACCC‑GGGCCAGGCCTGCGTCGATCACCACGCGCACGCCATCGATGGTCAGGCTGGTCTCAGCGATGTTGGTGGCCAGCACCACCTTGCGCAACCCCTTGGCCGGCGGGTCGATAGCGGCGCGCTGGGCATTGAGGTCGAGCTCGCCATG  >  AE015451/5434079‑5434510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.