| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5609848 | 43 (0.750) | 4 (0.070) | 4/328 | NT | 9.8% | coding (667/906 nt) | PP_4929 | Transcriptional regulator, LysR family |
| ? | AE015451 | = 5609893 | 32 (0.580) | coding (622/906 nt) | PP_4929 | Transcriptional regulator, LysR family | |||||
TCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5609679‑5609848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgccaCAACAAAGCGGTTACCCCGGCGGCGAGGCGATCAGCCCGCAGGTATGGCGTGCCGACAGTTTCTACGCCATGGCCGAACTGCTGATGCGCGGCCTTGGCTGGGCCTGGTTACCCCGGCATGTGGTGCAGTACCCGACCTACCAGGCGCACATGGTCGAACTGGACAGCGACTGGCGGCCGCCGGCCTTGGTGGCAGAGCTGGCCTGGCGCCGCGATGAACCTCTGG < AE015451/5609893‑5609668 TCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCACAACAAAGCGGTTACCCCGGCGGCGAGGCGATCA > 1:504425/1‑204TCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCACAACAAAGCGGTTACCCCGGCGGCGAGGCGATCA < 2:504422/204‑1 GCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCACAACAAAGCGGTTACCCCGGCGGCGAGGCGATCAGC < 1:142104/109‑1 GCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCACAACAAAGCGGTTACCCCGGCGGCGAGGCGATCAGC > 2:142102/1‑109 CACGCCACAACAAAGCGGTGACCCCGGCGGCGAGGCGATCAGCCCGCAGGTATGGCGTGCCGACAGTTTCTACGCCATGGCCGAACTGCTGATGCGCGGCCTTGGCTGGGCCTGGTTACCCCGGCATGTGGTGCAGTACCCGACCTACCAGGCGCACATGGTCGAACTGGACAGCGACTGGCGGCCGCCGGCCTTGGTGGCAGAGCTGGCCTGGCGCCGCGATGAACCTCTGG < 2:555225/233‑1 ACGCCACAACAAAGCGGTTACCCCGGCGGCGAGGCGATCAGCCCGCAGGTATGGCGTGCCGACAGTTTCTACGCCATGGCCGAACTGCTGATGCGCGGCCTTGGCTGGGCCTGGTTACCCCGGCATGTGGTGCAGTACCCGACCTACCAGGCGCACATGGTCGAA > 2:76475/1‑165 TCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAAACTGTCGGCACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5609679‑5609848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgccaCAACAAAGCGGTTACCCCGGCGGCGAGGCGATCAGCCCGCAGGTATGGCGTGCCGACAGTTTCTACGCCATGGCCGAACTGCTGATGCGCGGCCTTGGCTGGGCCTGGTTACCCCGGCATGTGGTGCAGTACCCGACCTACCAGGCGCACATGGTCGAACTGGACAGCGACTGGCGGCCGCCGGCCTTGGTGGCAGAGCTGGCCTGGCGCCGCGATGAACCTCTGG < AE015451/5609893‑5609668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |