New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5892003	61 (1.060)	4 (0.070)	4/318	NT	6.6%	coding (621/831 nt)	PP_5166	Sigma‑54 dependent transcriptional regulator
	?	AE015451	= 5892260	57 (1.060)					coding (364/831 nt)	PP_5166	Sigma‑54 dependent transcriptional regulator

TTACATAAGCCTCCTTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5891762‑5892003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccagcggcGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTGGATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCAGTATTTGCGCGAGGGCGCGCTGGAACTGCCGCCGCTGC  <  AE015451/5892260‑5892026                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTACATAAGCCTCCTTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGC                                                                                                                                                                                                                                                    >  1:390509/1‑235                                           GGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCCGCGGCc                                                                                                                                                                                                                                            >  2:877203/1‑200                                                 GCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGT                                                                                                                                                                                                        <  2:515482/231‑1                                                                           tcgTCGCCGTCATTGACCAGAAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCC                                                                                                                                                                                                                  <  1:86892/192‑1                                                                                                                  agCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCC                                                                                                                                  <  1:303065/234‑1                                                                                                                                  TATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCT                                                                                                                                                                                  >  2:303062/1‑172                                                                                                                                                       CCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTC                                                                                                                                                                                                                                                       <  2:769671/82‑1                                                                                                                                                                                                                                         GGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTGGATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCAGTATTTGCGCGAGGGCGCGCTGGAACTGC           >  1:748077/1‑236                                                                                                                                                                                                                                         GGCCAGCGGCGGCACCTTGTACCTGGACAAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTGGATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCAGTATTTGCGCGAGGGCGCGCTGGAACTGC           >  1:373539/1‑236                                                                                                                                                                                                                                                  CGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTGGATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCAGTATTTGCGCGAGGGCGCGCTGGAACTGCCGCCGCTGC  <  1:929330/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTACATAAGCCTCCTTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5891762‑5892003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccagcggcGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGTTGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTGGATGTGCGTCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTGGTGCGTGCAGGGCGCTTCAACGAGCGCCTGTACCAGTATTTGCGCGAGGGCGCGCTGGAACTGCCGCCGCTGC  <  AE015451/5892260‑5892026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.