New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5892003	61 (1.060)	4 (0.070)	4/318	NT	6.6%	coding (621/831 nt)	PP_5166	Sigma‑54 dependent transcriptional regulator
	?	AE015451	= 5892260	57 (1.060)					coding (364/831 nt)	PP_5166	Sigma‑54 dependent transcriptional regulator

TCCTTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCCAGCAGCTTGCCCTGGATGGCCAACGGCAAGTCGGCAA  >  AE015451/5891773‑5892238                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                            tcctTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGat                                                                                                                                                                                                                                        >  1:908337/1‑236 (MQ=255)                    tCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAgg                                                                                                                                                                                                                                          >  1:168556/1‑215 (MQ=255)                         cGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCTCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCa                                                                                                                                                                                                                                            >  1:245292/1‑208 (MQ=255)                               gggTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTcg                                                                                                                                                                                                                        >  1:940609/1‑222 (MQ=255)                                ggTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCCGCGGCc                                                                                                                                                                                                                                            >  2:877203‑M1/1‑200 (MQ=255)                                      gcaggTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCggcaccttgtacctggacgagattgccgacttgccgt                                                                                                                                                                                                        <  2:515482‑M1/231‑38 (MQ=255)                                          gTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAgcgcgc                                                                                                                                                                                               <  1:1062501/236‑1 (MQ=255)                                             gAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTc                                                                                                                                                                                                       >  1:348043/1‑225 (MQ=255)                                                     cGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCaaa                                                                                                                                                                                    >  1:510810/1‑236 (MQ=255)                                                      gggCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCaaa                                                                                                                                                                                    <  1:73866/235‑1 (MQ=255)                                                                tcgtcgcCGTCATTGACCAGAAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCggcaccttgtacctggacgagattgcc                                                                                                                                                                                                                  <  1:86892‑M1/192‑28 (MQ=255)                                                                         tCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAgcg                                                                                                                                                                                                                 <  2:428986/187‑1 (MQ=255)                                                                         tCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAgcg                                                                                                                                                                                                                 >  1:428989/1‑187 (MQ=255)                                                                            ttGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGtt                                                                                                                                                                <  2:510807/233‑1 (MQ=255)                                                                            ttGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGa                                                                                                                                                              <  1:666991/235‑1 (MQ=255)                                                                             tGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCACTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCa                                                                                                                                                                                                                    >  2:385695/1‑180 (MQ=255)                                                                                    cAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGcc                                                                                                                                                        <  2:1026266/233‑1 (MQ=255)                                                                                    cAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCt                                                                                                                                                      <  2:494904/235‑1 (MQ=255)                                                                                       tGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTcgc                                                                                                                                                                                                                       <  2:78823/167‑1 (MQ=255)                                                                                       tGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTgca                                                                                                                                                   >  1:1043466/1‑235 (MQ=255)                                                                                       tGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTgca                                                                                                                                                   >  1:687216/1‑235 (MQ=255)                                                                                                       agctccaGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCggcaccttgtacctggacgagattgccgacttgccgttggccatccagggcaagctgctggcggccctggaaaaccgcgaggtcactcgggtgggcgcgcagcagcc                                                                                                                                  <  1:303065‑M1/234‑108 (MQ=255)                                                                                                                  gcgGGTATTGCCGGGCCAGAATTGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCaa                                                                                                                                                                                     <  2:921096/174‑1 (MQ=255)                                                                                                                   cgGGTATTGCCGGGCCAGAAATGCCCCGCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAgc                                                                                                                                                           <  2:199088/199‑1 (MQ=255)                                                                                                                    gggTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCTTCGCGCa                                                                                                                                                                                      <  2:964129/171‑1 (MQ=255)                                                                                                                     ggTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGcacc                                                                                                                                             <  2:1056640/211‑1 (MQ=255)                                                                                                                      gTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGcggcgg                                                                                                                                                                                                             >  2:183176/1‑146 (MQ=255)                                                                                                                       tATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCggcaccttgtacctggacgagattgccgacttgccgttggccatccagggcaagctgct                                                                                                                                                                                  >  2:303062‑M1/1‑113 (MQ=255)                                                                                                                        aTTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCCCGCTCACCAAGGGCACAGGCCATTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCtgg                                                                                                                       <  2:591071/230‑1 (MQ=255)                                                                                                                                   aGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGa                                                                                                                             >  1:596860/1‑213 (MQ=255)                                                                                                                                   aGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATg                                                                                                                           >  2:963238/1‑215 (MQ=255)                                                                                                                                             cTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTAcc                                                                                                            <  2:639761/220‑1 (MQ=255)                                                                                                                                                   aaCCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCAGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGtt                                                                                                                                                                <  2:245289/162‑1 (MQ=255)                                                                                                                                                             gccgccTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGgcg                                                                                                                                                                      >  2:248434/1‑146 (MQ=255)                                                                                                                                                             gccgccTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGctgctg                                                                               <  2:687213/233‑1 (MQ=255)                                                                                                                                                                gccTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGcc                                                                                                                                                                                              >  2:300278/1‑119 (MQ=255)                                                                                                                                                                   tggCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGAGATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCaa                                                                                                                                                                                     <  2:90456/123‑1 (MQ=255)                                                                                                                                                                   tCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCAAGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAgcg                                                                                                                                                                                                                 <  2:1002450/97‑1 (MQ=255)                                                                                                                                                                    cGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGaa                                                                                                                                                             >  2:73167/1‑148 (MQ=255)                                                                                                                                                                    cGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAg                                                                                                                                  >  1:48232/1‑175 (MQ=255)                                                                                                                                                                        cACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTgcgc                                                                            <  1:300281/225‑1 (MQ=255)                                                                                                                                                                             aGGGCTCAGGCCGTTGCAGGCGCACCGTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCATGATATCGCCCCGCCGCTCGCGCAGTGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCTCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTCTGGCTGCTGCGCGCCCACCCGAGTg                                                               <  2:666127/233‑1 (MQ=255)                                                                                                                                                                                 cacaGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTcgc                                                                                                                                                                                         <  1:178768/107‑1 (MQ=255)                                                                                                                                                                                 cacaGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTcgc                                                                                                                                                                                         >  2:178766/1‑107 (MQ=255)                                                                                                                                                                                         gTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTcc                                                <  1:677919/236‑1 (MQ=255)                                                                                                                                                                                              aGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAgcgcgc                                                                                                                                                                                               <  1:690127/88‑1 (MQ=255)                                                                                                                                                                                              aGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAgcgcgc                                                                                                                                                                                               >  2:690124/1‑88 (MQ=255)                                                                                                                                                                                                   cACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTACAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGCAGCGCCCTgcac                                                                                                                                                  >  2:617916/1‑128 (MQ=255)                                                                                                                                                                                                      gCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTGCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGAc                                                                                                        <  2:348040/167‑1 (MQ=255)                                                                                                                                                                                                        tGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCt                                                                                                                                                      <  1:972502/119‑1 (MQ=255)                                                                                                                                                                                                        tGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCt                                                                                                                                                      >  2:972499/1‑119 (MQ=255)                                                                                                                                                                                                        tGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGa                                                                                                         >  1:332604/1‑164 (MQ=255)                                                                                                                                                                                                        tGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCt                                                           >  1:445277/1‑210 (MQ=255)                                                                                                                                                                                                          tAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCg                                                                   <  1:947562/200‑1 (MQ=255)                                                                                                                                                                                                               gCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCcagc                                    <  1:248437/226‑1 (MQ=255)                                                                                                                                                                                                                  cGCAAAGTACTCGGCCACCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGgctg                                                                                  <  2:943387/177‑1 (MQ=255)                                                                                                                                                                                                                   gCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGCGTGACCTcgcg                                                       >  1:253055/1‑203 (MQ=255)                                                                                                                                                                                                                   gCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCCAGCAGCtt                               >  2:455010/1‑227 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTcgc                                                                                                                                                                                         >  2:459775/1‑71 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTcgc                                                                                                                                                                                         <  1:459778/71‑1 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTgcac                                                                                                                                                  >  2:551372/1‑110 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTgcac                                                                                                                                                  <  1:551375/110‑1 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGca                                                                                                     >  2:953309/1‑155 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCAccc                                                                    >  2:748074/1‑188 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGgccg                                         >  2:639724/1‑215 (MQ=255)                                                                                                                                                                                                                     aaaGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCCAGCAGCTTGCCCTggct                      >  2:418018/1‑232 (MQ=255)                                                                                                                                                                                                                       aGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTTGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGa                                                                  >  1:137351/1‑188 (MQ=255)                                                                                                                                                                                                                       aGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCCCCACACGGGCCAGGTCGATGCCGGTGGCGGCTACCCGACGCACCTCCACCGGcc                                                                                         >  2:18655/1‑164 (MQ=255)                                                                                                                                                                                                                       aGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCcagcag                                  >  1:1052932/1‑220 (MQ=255)                                                                                                                                                                                                                              ggCCAGCGGCggcaccttgtacctggacgagattgccgacttgccgttggccatccagggcaagctgctggcggccctggaaaaccgcgaggtcactcgggtgggcgcgcagcagccacagccggtggatgtgcgtctggtagccgccaccagcatcgacctggcccgtgtggtgcgtgcagggcgcttcaacgagcgcctgtaccagtatttgcgcgagggcgcgctggaactgc           >  1:748077‑M1/1‑10 (MQ=255)                                                                                                                                                                                                                              ggCCAGCGGCggcaccttgtacctggacaagattgccgacttgccgttggccatccagggcaagctgctggcggccctggaaaaccgcgaggtcactcgggtgggcgcgcagcagccacagccggtggatgtgcgtctggtagccgccaccagcatcgacctggcccgtgtggtgcgtgcagggcgcttcaacgagcgcctgtaccagtatttgcgcgagggcgcgctggaactgc           >  1:373539‑M1/1‑10 (MQ=255)                                                                                                                                                                                                                                       cggcaccttgtacctggacgagattgccgacttgccgttggccatccagggcaagctgctggcggccctggaaaaccgcgaggtcactcgggtgggcgcgcagcagccacagccggtggatgtgcgtctggtagccgccaccagcatcgacctggcccgtgtggtgcgtgcagggcgcttcaacgagcgcctgtaccagtatttgcgcgagggcgcgctggaactgccgccgctgc  <  1:929330‑M1/236‑236 (MQ=255)                                                                                                                                                                                                                                       cAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACg                                                                                                       >  2:161357/1‑135 (MQ=255)                                                                                                                                                                                                                                       cAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCCAGCAGCTTGCCCTGGATGGCCAACGGCaa          >  1:637355/1‑228 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                            TCCTTACTCAGGAGCGATATCTAACGTGCGGGGTCAGGCAGGTCGAGGTCTTCGGGCAGGATCTCTTCGCCGTCATTGACCAGCAATGCAAAGTGGATGACGTTCTCCAGTTCGCGGGTATTGCCGGGCCAGAAATGCCCCTCCAGAACCCGCTGCGCCGCCTCGCTCACCAAGGGCACAGGCCGTTGCAGGCGCACGCTGTAGATGCCCGCAAAGTACTCGGCCAGCGGCAGGATATCGCCCGGCCGCTCGCGCAGCGGCGGCAGTTCCAGCGCGCCCTCGCGCAAATACTGGTACAGGCGCTCGTTGAAGCGCCCTGCACGCACCACACGGGCCAGGTCGATGCTGGTGGCGGCTACCAGACGCACATCCACCGGCTGTGGCTGCTGCGCGCCCACCCGAGTGACCTCGCGGTTTTCCAGGGCCGCCAGCAGCTTGCCCTGGATGGCCAACGGCAAGTCGGCAA  >  AE015451/5891773‑5892238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.