New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5964136 =	61 (1.060)	3 (0.060)	3/320	NT	4.9%	coding (226/900 nt)	xerC	Tyrosine recombinase XerC
	?	AE015451	5964263 =	60 (1.110)					coding (353/900 nt)	xerC	Tyrosine recombinase XerC
Rejected: Frequency below/above cutoff threshold.

GTGATCAAGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5964381‑5964136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcactgcAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTT  >  AE015451/5964263‑5964488                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGATCAAGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGC                                                                                                                                                                                                                                              <  1:600193/236‑1           TCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACT                                                                                                                                                                                                                                      <  2:468741/234‑1              AGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTG                                                                                                                                                                                                                                     <  2:415306/232‑1                           CCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCGGCTGCTCGATGGTG                                                                                                                                                                                                                     <  1:919611/235‑1                                  GCGTAGGGCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGC                                                                                                                                                                                                                                           <  2:750914/206‑1                                   CGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGC                                                                                                                                                                                                                                              <  2:764790/202‑1                                                                  TCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGC                                                                                                                                                                                                                                           >  2:526765/1‑174                                                                                                             gcctgctgtcgGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACT                                                                                                                                   <  1:860084/224‑1                                                                                                                                                                                          TGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATT                                                                                                                                                            <  2:1030337/133‑1                                                                                                                                                                                                                                            CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGT    >  1:431100/1‑235                                                                                                                                                                                                                                            CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTA                                                                               >  2:683811/1‑160                                                                                                                                                                                                                                            CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGC                                                                                           >  2:537161/1‑148                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTT  >  1:924320/1‑235                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCA                 >  1:764477/1‑220                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGAGTACTGCCGGGGGGTCGCAAGGat                               >  1:38829/1‑204                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCT                                                                                                                          >  1:303118/1‑115                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCC                                                                                                                                             >  1:811619/1‑96                                                                                                                                                                                                                                              GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCC                                                                                                                                             <  2:811616/96‑1                                                                                                                                                                                                                                                 CACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTA‑TCCTCGGGCCTACGCCTATCGGAACCTACCAACCTCGATCTTGAACACCTCGACCTTGC                                                                                                  >  2:888906/1‑135                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGATCAAGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5964381‑5964136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcactgcAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTT  >  AE015451/5964263‑5964488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.