New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	734319 =	27 (0.470)	7 (0.130)	6/320	NT	22.1%	coding (998/1296 nt)	ndh	NADH dehydrogenase
	?	AE015451	734381 =	24 (0.440)					coding (936/1296 nt)	ndh	NADH dehydrogenase

GGAAGAACCCGTACAGCGCCATCTGGTGCATGCGGTACAGCGACACATAGAACATGCGCGCCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCTTCAGGCTGGCCTGGA  >  AE015451/734089‑734532                                                                                                                                                                                                                                       |                                                                                                                                                                                                                      tcggggtgaaggtgatgaccaacgccgcagtcagtgaagtgaccgaggacggcctgaaaaccaaggacggtgaagtgatccaggccagcctgaaggtgtgggcagccggtatccgcgcgccaggtttcctcaaggacatcgatggcctggaaaccaaccgcatcaaccagctggtcgtgcgccctaccctgcaaaccacccgcgacgacaacatcttcgccttcggtgacTgcgc                                                                                                                                                                                                                   >  1:309572‑M1/231‑235 (MQ=255)                gcgcCATCTGGTGCATGCGGTACAGCGACACATAGAACATGCGCGCCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCgcgg                                                                                                                                                                                                    <  1:873360/235‑1 (MQ=255)                      tCTGGTGCATGCGGTACAGCGACACATAGAACATGCGCGCCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCAc                                                                                                                                                                                              >  1:564036/1‑235 (MQ=255)                                                           cgcCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAg                                                                                                                                                         >  1:551747/1‑235 (MQ=255)                                                           cgcCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGt                                                                                                                                                        >  1:223131/1‑236 (MQ=255)                                                                                  aggccagcctgaaggtgtgggcagccggtatccgcgcgccaggtttcctcaaggacatcgatggcctggaaaccaaccgcatcaaccagctggtcgtgcgccctaccctgcaaaccacccgcgacgacaacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCggg                                                                                                                                                                            <  2:81264‑M1/44‑1 (MQ=255)                                                                                  aggccagcctgaaggtgtgggcagccggtatccgcgcgccaggtttcctcaaggacatcgatggcctggaaaccaaccgcatcaaccagctggtcgtgcgccctaccctgcaaaccacccgcgacgacaacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCggg                                                                                                                                                                            >  1:81266‑M1/150‑193 (MQ=255)                                                                                          aTCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGa                                                                                                                                            <  2:528480/217‑1 (MQ=255)                                                                                                     cATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAgg                                                                                                               >  1:627096/1‑235 (MQ=255)                                                                                                         cggTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAgcgatc                                                                                                                                                             <  2:940414/184‑6 (MQ=255)                                                                                                                 cACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGCtgttg                                                                                                                                    >  1:213567/1‑202 (MQ=255)                                                                                                                 cACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGa                                                                                                  >  1:177838/1‑236 (MQ=255)                                                                                                                           aaGCGCGGCAGCGACACCAGCGAGCCATAGTCCTTGGACTCGTCCGTCGGCAGCGCCGTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCGGTGCGCgcgg                                                                                                                                                                                                    <  2:348670/128‑1 (MQ=255)                                                                                                                            ggcgcGGCAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCa                                                                                                                                                      <  2:702415/172‑1 (MQ=255)                                                                                                                                   cagcgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGgc                                                                                                        >  2:314495/1‑212 (MQ=255)                                                                                                                                    agcgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGa                                                                                      <  1:314498/229‑1 (MQ=255)                                                                                                                                               cGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCg                                                                                                                                                                              <  2:744638/130‑1 (MQ=255)                                                                                                                                                                       cGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGTTGGTTGATGCGGTTGGTTTCCAGGc                                                                    >  1:250206/1‑212 (MQ=255)                                                                                                                                                                       cGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATg                                                            >  1:989030/1‑220 (MQ=255)                                                                                                                                                                          cGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                                          >  2:446594/1‑139 (MQ=255)                                                                                                                                                                          cGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggttggtt                                                                           >  2:654791/1‑202 (MQ=255)                                                                                                                                                                                   cTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAgg                                                                                                                                                                 <  2:523936/107‑1 (MQ=255)                                                                                                                                                                                   cTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAgg                                                                                                                                                                 >  1:523939/1‑107 (MQ=255)                                                                                                                                                                                            cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCATCTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTCGAGGAAACCTGGCGCGCGGATACCGGCTGc                         <  1:600050/234‑1 (MQ=255)                                                                                                                                                                                                    ccTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCtt                >  1:193777/1‑235 (MQ=255)                                                                                                                                                                                                    ccTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGGTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGcgcgcg                                     >  1:209342/1‑214 (MQ=255)                                                                                                                                                                                                     cTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAg                                                                      >  2:837852/1‑180 (MQ=255)                                                                                                                                                                                                      acccgcgacgacaacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATAcc                               <  2:76443‑M1/185‑1 (MQ=255)                                                                                                                                                                                                      acccgcgacgacaacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGACCGCTGc                                                                                                                                                                                <  2:308682‑M1/40‑1 (MQ=255)                                                                                                                                                                                                         cgcgacgacaacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTGAcc                                                                                                                                                    <  2:560294‑M1/68‑1 (MQ=255)                                                                                                                                                                                                               tGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCTTCAGGCTGGCCt     <  2:564033/235‑1 (MQ=255)                                                                                                                                                                                                                 caacatcttcgccttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCTTc               >  1:76445‑M1/23‑223 (MQ=255)                                                                                                                                                                                                                  gcCAGCATCGAAGCCTGCTGGTGCGCCGCCTGGGCGCGCGGCGGCCCGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAAcc                                              <  2:273732/191‑1 (MQ=255)                                                                                                                                                                                                                             cttcggtgacTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTCGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTc                                                                         <  1:1031522‑M1/143‑1 (MQ=255)                                                                                                                                                                                                                               ccTGCTGGGGCGCCGCCTGTGCGCGCGGCGGCACGTTACGAGCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCTTCAGGCTGGCCTGGa  <  1:148952/222‑1 (MQ=255)                                                                                                                                                                                                                                      gTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGc                         <  2:1011735/192‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                      GGAAGAACCCGTACAGCGCCATCTGGTGCATGCGGTACAGCGACACATAGAACATGCGCGCCAGCCAGCCTTCCAGCTTCACGCTGCCCATCAGGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACACCTTCAGGCTGGCCTGGA  >  AE015451/734089‑734532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.